Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   AEI26_RS07355 Genome accession   NZ_CP012212
Coordinates   1403856..1405037 (-) Length   393 a.a.
NCBI ID   WP_088306180.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ017CCUA     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1398856..1410037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI26_RS07325 (AEI26_07260) - 1399402..1399743 (+) 342 WP_002862122.1 hypothetical protein -
  AEI26_RS07330 (AEI26_07265) flgM 1399806..1400003 (+) 198 WP_002792053.1 flagellar biosynthesis anti-sigma factor FlgM -
  AEI26_RS07335 (AEI26_07270) - 1400044..1400478 (+) 435 WP_044778880.1 flagellar protein FlgN -
  AEI26_RS07340 (AEI26_07275) flgK 1400488..1402314 (+) 1827 WP_002870892.1 flagellar hook-associated protein FlgK -
  AEI26_RS07345 (AEI26_07280) - 1402331..1403095 (+) 765 WP_044778882.1 TIGR02757 family protein -
  AEI26_RS07350 (AEI26_07285) - 1403099..1403863 (+) 765 WP_002855301.1 TSUP family transporter -
  AEI26_RS07355 (AEI26_07290) ctsF 1403856..1405037 (-) 1182 WP_088306180.1 type II secretion system F family protein Machinery gene
  AEI26_RS07360 (AEI26_07295) ctsE 1405034..1406593 (-) 1560 WP_070298498.1 GspE/PulE family protein Machinery gene
  AEI26_RS07365 (AEI26_07300) ctsX 1406583..1407170 (-) 588 WP_070298499.1 transformation system protein Machinery gene
  AEI26_RS07370 (AEI26_07305) ctsP 1407174..1407782 (-) 609 WP_002862129.1 ATP-binding protein Machinery gene
  AEI26_RS07375 (AEI26_07310) ctsD 1407775..1409187 (-) 1413 WP_002870886.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  AEI26_RS07380 (AEI26_07315) ctsR 1409165..1409476 (-) 312 WP_002862131.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45731.45 Da        Isoelectric Point: 9.2583

>NTDB_id=152331 AEI26_RS07355 WP_088306180.1 1403856..1405037(-) (ctsF) [Campylobacter jejuni strain CJ017CCUA]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDGYGIFCILLFVIFIIMLILAYKHFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQVFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=152331 AEI26_RS07355 WP_088306180.1 1403856..1405037(-) (ctsF) [Campylobacter jejuni strain CJ017CCUA]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTGATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTAGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCTCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGCTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCGTGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGGCTATGGAATTTTTTGCA
TACTTTTGTTTGTTATTTTTATTATTATGCTTATTTTAGCTTATAAACATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTACT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGTTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGTGTTGCGATGAAAAGTGGAAGACTTGAAGTATTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGCGAAAATTTGATGGATAGATTTTTGGTTTTTTTAGAACCTATGATGACTTTATTTGTAGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTCTTACCTATGTGGGAGCTTAGCTCAGGGGTCAATTTTAACTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977

Multiple sequence alignment