Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsT   Type   Machinery gene
Locus tag   AEI05_RS05585 Genome accession   NZ_CP012205
Coordinates   1064813..1065115 (+) Length   100 a.a.
NCBI ID   WP_002853046.1    Uniprot ID   Q0P9H7
Organism   Campylobacter jejuni strain CJ510CC45     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1059813..1070115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AEI05_RS05545 (AEI05_05580) rpsF 1060603..1060980 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  AEI05_RS05550 (AEI05_05585) ssb 1060989..1061540 (+) 552 WP_002853013.1 single-stranded DNA-binding protein -
  AEI05_RS05555 (AEI05_05590) rpsR 1061646..1061906 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  AEI05_RS05560 (AEI05_05595) - 1061966..1062436 (-) 471 Protein_1089 S16 family serine protease -
  AEI05_RS05565 (AEI05_05600) rpsR 1062437..1062628 (+) 192 Protein_1090 30S ribosomal protein S18 -
  AEI05_RS05570 (AEI05_05605) - 1062689..1063819 (-) 1131 Protein_1091 S16 family serine protease -
  AEI05_RS05575 (AEI05_05610) fliW 1063816..1064085 (+) 270 Protein_1092 flagellar assembly protein FliW -
  AEI05_RS05580 (AEI05_05615) proC 1064085..1064816 (+) 732 WP_002859150.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI05_RS05585 (AEI05_05620) ctsT 1064813..1065115 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene
  AEI05_RS05590 - 1065112..1065264 (+) 153 Protein_1095 hypothetical protein -
  AEI05_RS05595 (AEI05_05625) - 1065265..1066695 (-) 1431 Protein_1096 LON peptidase substrate-binding domain-containing protein -
  AEI05_RS05600 (AEI05_05630) bamD 1066712..1067359 (-) 648 WP_002877748.1 outer membrane protein assembly factor BamD -
  AEI05_RS05605 (AEI05_05635) fliW 1067520..1067909 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  AEI05_RS05610 (AEI05_05640) proC 1067909..1068640 (+) 732 WP_002932769.1 pyrroline-5-carboxylate reductase Machinery gene
  AEI05_RS05615 (AEI05_05645) ctsT 1068637..1068939 (+) 303 WP_057042823.1 hypothetical protein Machinery gene
  AEI05_RS05620 (AEI05_05650) - 1068936..1069598 (+) 663 WP_002866103.1 hypothetical protein -
  AEI05_RS05625 (AEI05_05655) - 1069595..1070047 (+) 453 WP_032603535.1 hypothetical protein -

Sequence

Protein


Download         Length: 100 a.a.        Molecular weight: 12162.27 Da        Isoelectric Point: 6.2957

>NTDB_id=152212 AEI05_RS05585 WP_002853046.1 1064813..1065115(+) (ctsT) [Campylobacter jejuni strain CJ510CC45]
MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERLYKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDG
IFQFQKLYFQDQNYSVYFKE

Nucleotide


Download         Length: 303 bp        

>NTDB_id=152212 AEI05_RS05585 WP_002853046.1 1064813..1065115(+) (ctsT) [Campylobacter jejuni strain CJ510CC45]
ATGAAAAAGGCTTTCATACTTATAGAAAGCATTAGTGCTATAACGATCATATCTTTAATTTTCATTGGCATTTTTTATTA
CTATATTCAACTTTACAAAAACTATGAAAATTTAAATATTTTTGAAAGACTCTATAAACTTCAAGAAGAATTATATGAAA
AGCCTATTTTTAAAACCATCATACTTCAAACTTCAGCCTTAAAACCTATAGTTTTACAAGAACAGTTTGTTAATGATGGT
ATATTTCAATTTCAAAAATTATACTTTCAAGATCAAAATTATAGCGTTTATTTTAAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0P9H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsT Campylobacter jejuni subsp. jejuni 81-176

99

100

0.99

Multiple sequence alignment