Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   A4U84_RS05765 Genome accession   NZ_CP015099
Coordinates   1253443..1255524 (+) Length   693 a.a.
NCBI ID   WP_021117576.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SC1401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1248443..1260524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U84_RS05740 (A4U84_05740) - 1248869..1249546 (-) 678 WP_021115350.1 phosphoribosyltransferase family protein -
  A4U84_RS05745 (A4U84_05745) - 1249670..1250479 (+) 810 WP_021119285.1 Cof-type HAD-IIB family hydrolase -
  A4U84_RS05750 (A4U84_05750) - 1250610..1251176 (-) 567 WP_021112882.1 biotin transporter BioY -
  A4U84_RS05755 (A4U84_05755) - 1251200..1252024 (+) 825 WP_235629422.1 BPL-N domain-containing protein -
  A4U84_RS05760 (A4U84_05760) - 1252125..1253330 (+) 1206 WP_021114318.1 cupin domain-containing protein -
  A4U84_RS05765 (A4U84_05765) recG 1253443..1255524 (+) 2082 WP_021117576.1 ATP-dependent DNA helicase RecG Machinery gene
  A4U84_RS05770 (A4U84_05770) - 1255808..1256209 (+) 402 WP_062924156.1 YgiW/YdeI family stress tolerance OB fold protein -
  A4U84_RS11095 - 1256315..1257016 (+) 702 Protein_1131 transposase -
  A4U84_RS05790 (A4U84_05790) glnA 1257083..1258510 (-) 1428 WP_010786482.1 type I glutamate--ammonia ligase -
  A4U84_RS05795 (A4U84_05795) rbsK 1258830..1259750 (-) 921 WP_062924158.1 ribokinase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 77375.53 Da        Isoelectric Point: 9.0494

>NTDB_id=151753 A4U84_RS05765 WP_021117576.1 1253443..1255524(+) (recG) [Glaesserella parasuis strain SC1401]
MSQQLLDGVPLTALSGVGAAISEKLSRIGINNVQDLLFHLPMRYEDRTRITPIADVRPESFATVEGFVQLTEVQFGRRPI
LSTTISDGTSKITLKFFNFNAGMKNSLATGVRVKAFGEIKRGRFMAEIHHPEYQIIRGNQPLELAETLTPIYPTTEGLKQ
ASLRKLTDQALALLERVQVAELLPDEFNPHKYSLKEALQLLHRPPPSVSSELLDKGEHPAQKRLIFEELLAHNLAMQQVR
MGVQQHFAEPLRYQTDLKQRFLATLPFQPTNAQSRVTTEIEQDLAKPFPMMRLVQGDVGSGKTLVAALAALLAIDNGKQV
ALMAPTEILAEQHAHNFANWLRPFGIEVGWLAGKVKGKARTAQLEAIKNGDVQMIIGTHALFQDQVEFHHLALVIIDEQH
RFGVHQRLTLREKGAKGDVYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAISEDRRDEVVRRVYQACK
NEKRQAYWVCTLIDESEVLEAQAAAAIAEDLQRALPDLRIGLVHGRMKPQEKQAIMAEFKAANIDLLVATTVIEVGVDVP
NASLMIIENSERLGLAQLHQLRGRVGRGATASHCVLMYKAPLGKISSKRLQVLRDSQDGFVIAEKDLEIRGPGEVLGTKQ
TGMAEFKIANLMRDRKMIPLVQNYAKQLTLKYPDTAKQLIRRWLDEKTVYSNA

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=151753 A4U84_RS05765 WP_021117576.1 1253443..1255524(+) (recG) [Glaesserella parasuis strain SC1401]
ATGAGCCAACAACTATTAGACGGTGTACCGCTAACCGCCCTTTCGGGTGTTGGGGCGGCGATTTCAGAGAAACTCAGTCG
GATCGGCATTAATAATGTGCAAGATCTGCTGTTCCATTTGCCTATGCGCTATGAAGACCGTACTCGGATCACGCCGATTG
CGGATGTTCGTCCTGAAAGTTTTGCGACGGTTGAAGGCTTTGTGCAACTGACGGAAGTGCAATTTGGTCGTCGTCCGATT
TTAAGTACCACAATTTCTGACGGCACAAGCAAAATTACCCTGAAATTCTTTAATTTCAATGCGGGAATGAAAAATAGTCT
GGCAACTGGTGTAAGAGTGAAAGCCTTTGGCGAGATTAAACGTGGTCGCTTTATGGCAGAAATTCATCACCCTGAATATC
AAATTATTCGGGGAAATCAACCGCTTGAGCTGGCAGAAACATTAACACCGATTTACCCGACAACCGAAGGCTTGAAGCAA
GCCTCTTTGCGTAAATTAACCGATCAAGCCTTGGCGTTACTTGAGCGTGTGCAAGTGGCAGAATTGCTTCCTGATGAATT
TAATCCACACAAATATAGCTTAAAAGAAGCTTTGCAGTTGTTGCATCGACCGCCACCGAGTGTGTCGTCCGAATTGTTAG
ATAAAGGCGAGCACCCTGCACAAAAACGGCTGATTTTTGAAGAGCTGTTGGCTCATAATTTGGCGATGCAACAGGTACGA
ATGGGTGTGCAACAACATTTTGCGGAACCGCTACGTTATCAAACCGATTTAAAACAACGCTTTTTAGCCACTTTGCCGTT
TCAACCGACCAACGCTCAAAGCCGTGTGACTACGGAGATTGAACAGGATTTGGCAAAACCTTTTCCGATGATGCGACTGG
TGCAAGGCGATGTGGGTTCAGGCAAAACCCTTGTGGCTGCGTTAGCGGCACTGTTGGCGATTGATAATGGTAAACAGGTG
GCGTTAATGGCACCGACCGAAATTCTCGCCGAGCAACACGCTCACAATTTTGCCAACTGGTTGCGACCTTTTGGGATCGA
AGTGGGCTGGTTAGCTGGCAAAGTGAAAGGTAAAGCGAGAACAGCTCAGTTGGAAGCGATTAAAAACGGCGATGTTCAGA
TGATTATCGGCACGCACGCCCTGTTTCAAGATCAGGTGGAATTTCATCATCTTGCTCTTGTGATTATTGATGAACAGCAC
CGCTTTGGTGTACATCAGCGTTTAACCCTACGCGAGAAAGGGGCGAAGGGCGATGTCTATCCTCACCAGTTGATTATGAC
CGCAACGCCTATTCCACGCACCTTGGCGATGACCGTCTATGCGGATTTGGATACGTCCATTATTGACGAACTTCCCCCAG
GGCGAACGCCGATCACGACGGTGGCGATTTCGGAAGATCGCCGAGATGAAGTGGTTCGCCGTGTTTATCAAGCCTGTAAA
AATGAAAAACGCCAAGCCTATTGGGTCTGTACGCTAATTGATGAGTCGGAAGTGTTAGAAGCACAAGCGGCGGCAGCCAT
TGCAGAAGATTTGCAACGTGCTTTGCCAGATTTGCGGATTGGGTTGGTTCACGGGCGAATGAAACCACAGGAAAAACAGG
CAATTATGGCGGAATTTAAGGCGGCAAATATTGATTTGTTGGTGGCAACAACGGTGATTGAAGTCGGTGTAGATGTGCCG
AATGCCAGTTTGATGATTATCGAAAATTCCGAACGCTTGGGATTGGCACAGCTGCACCAACTGCGTGGGCGTGTTGGACG
AGGAGCGACGGCTTCCCATTGTGTCTTGATGTACAAAGCCCCATTGGGTAAAATTTCATCTAAACGGTTACAGGTACTGA
GAGATAGCCAAGACGGTTTTGTGATTGCTGAAAAAGATTTGGAAATTCGTGGTCCGGGTGAAGTGTTAGGCACAAAACAG
ACAGGTATGGCGGAGTTCAAAATTGCGAATTTAATGCGAGATCGCAAGATGATCCCATTGGTGCAGAACTACGCCAAACA
GCTGACGTTAAAATATCCTGATACGGCTAAACAGCTAATTCGCCGTTGGCTTGATGAAAAGACGGTTTATAGTAATGCGT
AA

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(16-172)

Helicase conserved C-terminal domain (Helicase_C)

(475-588)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(617-674)

DEAD/DEAH box helicase (DEAD)

(292-407)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

49.185

97.403

0.479
  recG Bacillus subtilis subsp. subtilis str. 168

39.559

98.124

0.388
  recG/mmsA Streptococcus pneumoniae R6

39.482

94.661

0.374
  recG/mmsA Streptococcus pneumoniae R36A

39.482

94.661

0.374