Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   A4U84_RS03695 Genome accession   NZ_CP015099
Coordinates   796104..796820 (-) Length   238 a.a.
NCBI ID   WP_021113221.1    Uniprot ID   -
Organism   Glaesserella parasuis strain SC1401     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 791104..801820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A4U84_RS03670 (A4U84_03670) ciaR 792178..792849 (-) 672 WP_021119362.1 response regulator Regulator
  A4U84_RS03675 (A4U84_03675) - 792910..793275 (-) 366 WP_021114421.1 YgiW/YdeI family stress tolerance OB fold protein -
  A4U84_RS03680 (A4U84_03680) - 793444..795405 (-) 1962 WP_062924026.1 TonB-dependent receptor domain-containing protein -
  A4U84_RS03685 (A4U84_03685) rpmG 795560..795730 (-) 171 WP_005624479.1 50S ribosomal protein L33 -
  A4U84_RS03690 (A4U84_03690) rpmB 795742..795978 (-) 237 WP_006251446.1 50S ribosomal protein L28 -
  A4U84_RS03695 (A4U84_03695) radC 796104..796820 (-) 717 WP_021113221.1 RadC family protein Machinery gene
  A4U84_RS03700 (A4U84_03700) coaBC 796990..798195 (+) 1206 WP_062924027.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  A4U84_RS03705 (A4U84_03705) dut 798192..798647 (+) 456 WP_021119359.1 dUTP diphosphatase -
  A4U84_RS03710 (A4U84_03710) slmA 798656..799261 (+) 606 WP_021114417.1 nucleoid occlusion factor SlmA -
  A4U84_RS03715 (A4U84_03715) - 799269..799493 (+) 225 WP_005713165.1 YheU family protein -
  A4U84_RS03720 (A4U84_03720) crp 799560..800234 (+) 675 WP_005713163.1 cAMP-activated global transcriptional regulator CRP Regulator
  A4U84_RS03725 (A4U84_03725) - 800489..800740 (+) 252 WP_223300025.1 hypothetical protein -
  A4U84_RS03730 (A4U84_03730) - 800779..800925 (+) 147 WP_021110348.1 hypothetical protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27291.45 Da        Isoelectric Point: 4.7438

>NTDB_id=151747 A4U84_RS03695 WP_021113221.1 796104..796820(-) (radC) [Glaesserella parasuis strain SC1401]
MNESSYELMPREKLLKFGAEALSDAELLAIFLRTGIKGIPVMDLSESVLTAFGSLRGLLSATLEDFCKIKGLGQIQYIQL
QATKEMTKRYLSQQMKVNEMVDSPYLAVMYFQSELESWEREVFMVIFLDNQNRLIKTEKMFYGTINQASVHPREIIKEAL
KCNAAAILVAHNHPSGNCNPSEADRFLTRKIEMACDLVDIRFVDHIIVGKGDYFSFEEEKFEQENYEFSPCLDELKQV

Nucleotide


Download         Length: 717 bp        

>NTDB_id=151747 A4U84_RS03695 WP_021113221.1 796104..796820(-) (radC) [Glaesserella parasuis strain SC1401]
ATGAATGAAAGTTCTTATGAATTAATGCCAAGAGAAAAATTACTAAAATTTGGGGCAGAAGCTTTAAGTGATGCGGAGCT
ATTGGCAATCTTTTTACGCACAGGAATTAAAGGGATACCTGTAATGGATTTATCAGAAAGTGTATTAACTGCCTTTGGCT
CATTACGAGGATTGCTGTCAGCGACATTAGAGGATTTTTGTAAAATCAAAGGGTTAGGGCAAATTCAGTACATTCAACTT
CAGGCTACGAAAGAGATGACGAAACGCTATCTATCCCAACAAATGAAAGTCAATGAAATGGTAGATAGTCCCTATTTGGC
GGTAATGTATTTTCAATCGGAATTAGAATCTTGGGAGCGAGAGGTGTTTATGGTGATCTTTTTAGATAACCAAAATAGGC
TAATTAAAACAGAAAAAATGTTTTATGGCACGATCAACCAAGCATCTGTTCATCCTCGTGAAATCATCAAAGAGGCCTTA
AAGTGTAATGCTGCTGCCATTTTAGTTGCTCATAACCACCCATCTGGCAATTGTAATCCAAGTGAGGCTGATCGCTTTCT
AACTCGAAAAATCGAAATGGCGTGCGATTTAGTCGATATTCGCTTTGTTGATCATATTATTGTTGGCAAAGGTGACTATT
TTTCGTTCGAAGAAGAGAAGTTTGAACAGGAAAATTACGAATTTTCCCCTTGTTTAGATGAGCTAAAGCAAGTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-220)

UPF0758 N-terminal (UPF0758_N)

(8-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

61.111

90.756

0.555