Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   WX61_RS15825 Genome accession   NZ_CP012028
Coordinates   814246..814509 (+) Length   87 a.a.
NCBI ID   WP_407716437.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 35/02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 809246..819509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  WX61_RS15265 - 809554..809895 (+) 342 Protein_807 pilin -
  WX61_RS15270 - 810429..810812 (+) 384 Protein_808 pilin -
  WX61_RS14820 - 810852..811211 (+) 360 Protein_809 pilin -
  WX61_RS04300 (WX61_00832) lpxC 811704..812627 (+) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  WX61_RS04305 (WX61_00833) - 812772..813152 (+) 381 Protein_811 pilin -
  WX61_RS04310 - 813498..813641 (+) 144 WP_003691943.1 hypothetical protein -
  WX61_RS15820 (WX61_00834) pilE 814010..814321 (+) 312 WP_200899946.1 pilin Machinery gene
  WX61_RS15825 pilE 814246..814509 (+) 264 WP_407716437.1 pilin Machinery gene
  WX61_RS04325 (WX61_00835) - 814979..815743 (+) 765 Protein_815 opacity family porin -
  WX61_RS04330 (WX61_00836) pilA 816007..817260 (-) 1254 WP_003691946.1 signal recognition particle-docking protein FtsY Machinery gene
  WX61_RS04335 (WX61_00837) msrAB 817406..818974 (+) 1569 WP_003687002.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -

Sequence

Protein


Download         Length: 87 a.a.        Molecular weight: 9346.80 Da        Isoelectric Point: 11.1501

>NTDB_id=150671 WX61_RS15825 WP_407716437.1 814246..814509(+) (pilE) [Neisseria gonorrhoeae strain 35/02]
MKGKYVESVTVTNGVVTAKMLSSGVNKEIQGKKLSLWAKRQAGSVKWFCGQPVKRTDAKADTVPTTPAPTTPASQNRHQA
PAVNLPR

Nucleotide


Download         Length: 264 bp        

>NTDB_id=150671 WX61_RS15825 WP_407716437.1 814246..814509(+) (pilE) [Neisseria gonorrhoeae strain 35/02]
ATCAAAGGCAAATATGTTGAAAGCGTTACGGTCACAAACGGCGTCGTTACCGCCAAAATGCTTTCAAGCGGCGTAAACAA
AGAAATCCAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTA
AGCGCACCGACGCCAAAGCCGACACCGTGCCGACGACGCCGGCACCGACAACGCCGGCAAGCCAAAATCGACACCAAGCA
CCTGCCGTCAACCTGCCGCGATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(6-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

74.603

72.414

0.54
  pilE Neisseria gonorrhoeae MS11

73.016

72.414

0.529

Multiple sequence alignment