Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   VT05_RS01030 Genome accession   NZ_CP012026
Coordinates   190361..190969 (+) Length   202 a.a.
NCBI ID   WP_003692823.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA19     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 185361..195969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS01005 (VT05_00197) - 185743..186324 (-) 582 WP_003692817.1 superoxide dismutase -
  VT05_RS01010 (VT05_00198) dnaB 186488..187891 (+) 1404 WP_003692818.1 replicative DNA helicase -
  VT05_RS16295 - 187885..187997 (-) 113 Protein_195 IS5/IS1182 family transposase -
  VT05_RS01015 (VT05_00199) pilH 188148..188813 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  VT05_RS01020 (VT05_00200) pilV 188845..189453 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  VT05_RS01025 (VT05_00201) pilJ 189450..190382 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  VT05_RS01030 (VT05_00202) pilK 190361..190969 (+) 609 WP_003692823.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VT05_RS01035 (VT05_00203) pilL 190971..191444 (+) 474 WP_025462870.1 PilX family type IV pilin Machinery gene
  VT05_RS01045 - 192056..192501 (-) 446 Protein_201 AzlC family ABC transporter permease -
  VT05_RS01050 (VT05_00205) dut 192667..193119 (+) 453 WP_003692832.1 dUTP diphosphatase -
  VT05_RS01055 (VT05_00206) dapC 193191..194378 (+) 1188 WP_003692834.1 succinyldiaminopimelate transaminase -
  VT05_RS01060 (VT05_00207) yaaA 194534..195313 (+) 780 WP_003692836.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21896.78 Da        Isoelectric Point: 8.0870

>NTDB_id=150535 VT05_RS01030 WP_003692823.1 190361..190969(+) (pilK) [Neisseria gonorrhoeae strain FA19]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFGENCEKGLCTAVNVRTNNANEESFGNIVVQGTPTVEAVKRSCPAKSGKNSTGLCIDNQGVEYKKGTASVSKMPR
YIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=150535 VT05_RS01030 WP_003692823.1 190361..190969(+) (pilK) [Neisseria gonorrhoeae strain FA19]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTGGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTACGGACAAATAATGCTAATGA
AGAGTCTTTTGGCAATATCGTGGTGCAAGGCACGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTGGCA
AAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATAAGAAAGGCACGGCAAGCGTCAGCAAAATGCCGCGC
TATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAA
TACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.955

Multiple sequence alignment