Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   VT05_RS01015 Genome accession   NZ_CP012026
Coordinates   188148..188813 (+) Length   221 a.a.
NCBI ID   WP_003692819.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain FA19     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 183148..193813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VT05_RS00990 (VT05_00194) cysT 183322..184160 (-) 839 Protein_190 sulfate ABC transporter permease subunit CysT -
  VT05_RS00995 (VT05_00195) - 184341..184673 (+) 333 WP_003687908.1 hypothetical protein -
  VT05_RS01000 (VT05_00196) - 185004..185513 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  VT05_RS01005 (VT05_00197) - 185743..186324 (-) 582 WP_003692817.1 superoxide dismutase -
  VT05_RS01010 (VT05_00198) dnaB 186488..187891 (+) 1404 WP_003692818.1 replicative DNA helicase -
  VT05_RS16295 - 187885..187997 (-) 113 Protein_195 IS5/IS1182 family transposase -
  VT05_RS01015 (VT05_00199) pilH 188148..188813 (+) 666 WP_003692819.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  VT05_RS01020 (VT05_00200) pilV 188845..189453 (+) 609 WP_003692820.1 type IV pilus modification protein PilV Machinery gene
  VT05_RS01025 (VT05_00201) pilJ 189450..190382 (+) 933 WP_003692822.1 PilW family protein Machinery gene
  VT05_RS01030 (VT05_00202) pilK 190361..190969 (+) 609 WP_003692823.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  VT05_RS01035 (VT05_00203) pilL 190971..191444 (+) 474 WP_025462870.1 PilX family type IV pilin Machinery gene
  VT05_RS01045 - 192056..192501 (-) 446 Protein_201 AzlC family ABC transporter permease -
  VT05_RS01050 (VT05_00205) dut 192667..193119 (+) 453 WP_003692832.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24573.13 Da        Isoelectric Point: 9.3895

>NTDB_id=150532 VT05_RS01015 WP_003692819.1 188148..188813(+) (pilH) [Neisseria gonorrhoeae strain FA19]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPTQVKKDGTGN
NRCDLGKKEQGMLAFGDKNGNKVYDGDAADVFLRSVVLNDDIKDKRIDYTFNHIAFGQTRPTADRVVWTFNQNGTFGYLS
DQNLKNDSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLINSSGRVEVCPKNDTRAVCKH

Nucleotide


Download         Length: 666 bp        

>NTDB_id=150532 VT05_RS01015 WP_003692819.1 188148..188813(+) (pilH) [Neisseria gonorrhoeae strain FA19]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATTGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTACCCAAGTTAAAAAAGACGGTACGGGCAAC
AACCGATGCGACCTCGGTAAGAAGGAACAGGGGATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGTATATGACGGCGA
TGCTGCGGATGTTTTTCTCCGCAGCGTGGTATTGAATGATGATATCAAGGATAAGCGGATTGATTACACTTTCAATCATA
TCGCTTTCGGTCAAACACGGCCGACTGCCGATCGTGTTGTTTGGACTTTTAACCAAAACGGGACATTCGGCTATTTGTCC
GATCAGAATCTCAAGAATGATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGT
TTCTGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTTGAAGTTTGTCCTAAAAACG
ATACGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(44-205)

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

87.33

100

0.873

Multiple sequence alignment