Detailed information
Bioinformatically predicted
Overview
| Name | degU | Type | Regulator |
| Locus tag | BSM4216_RS02035 | Genome accession | NZ_CP012024 |
| Coordinates | 425810..426487 (+) | Length | 225 a.a. |
| NCBI ID | WP_004439660.1 | Uniprot ID | G9QM16 |
| Organism | Bacillus smithii strain DSM 4216 | ||
| Function | activation of comK (predicted from homology) Competence regulation |
||
Genomic Context
Location: 420810..431487
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSM4216_RS02020 (BSM4216_0472) | - | 422177..423154 (-) | 978 | WP_048622549.1 | LCP family protein | - |
| BSM4216_RS02025 (BSM4216_0473) | - | 423563..424201 (-) | 639 | WP_004439637.1 | YigZ family protein | - |
| BSM4216_RS02030 (BSM4216_0474) | degS | 424504..425670 (+) | 1167 | WP_048622550.1 | sensor histidine kinase | Regulator |
| BSM4216_RS02035 (BSM4216_0475) | degU | 425810..426487 (+) | 678 | WP_004439660.1 | response regulator transcription factor | Regulator |
| BSM4216_RS02040 (BSM4216_0476) | treR | 426531..427253 (-) | 723 | WP_048622551.1 | trehalose operon repressor | - |
| BSM4216_RS02045 (BSM4216_0479) | treC | 427705..429372 (-) | 1668 | WP_048622552.1 | alpha,alpha-phosphotrehalase | - |
| BSM4216_RS02050 (BSM4216_0481) | treP | 429815..431233 (-) | 1419 | WP_048622553.1 | PTS system trehalose-specific EIIBC component | - |
Sequence
Protein
Download Length: 225 a.a. Molecular weight: 25328.11 Da Isoelectric Point: 7.5521
>NTDB_id=150489 BSM4216_RS02035 WP_004439660.1 425810..426487(+) (degU) [Bacillus smithii strain DSM 4216]
MATKIVIIDDHQLFREGVKRILEFEKSFKIVAEGDDGSDVLELVERHRPDVVLMDINMPGVNGVEATKQLVDAYPKTKVI
ILSIHDDENYVAHALTSGARGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHNLIADYRRLTSSDRKKGFQQGEVRRPYH
LLTKRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTAIKRGWVEVR
MATKIVIIDDHQLFREGVKRILEFEKSFKIVAEGDDGSDVLELVERHRPDVVLMDINMPGVNGVEATKQLVDAYPKTKVI
ILSIHDDENYVAHALTSGARGYLLKEMDADALIEAVKVVAEGGSYLHPKVTHNLIADYRRLTSSDRKKGFQQGEVRRPYH
LLTKRECEVLQLLADGKSNRAIGEALYISEKTVKNHVSNILQKMNVNDRTQAVVTAIKRGWVEVR
Nucleotide
Download Length: 678 bp
>NTDB_id=150489 BSM4216_RS02035 WP_004439660.1 425810..426487(+) (degU) [Bacillus smithii strain DSM 4216]
ATGGCAACGAAGATTGTCATAATCGATGACCATCAATTATTCCGTGAAGGAGTAAAACGAATATTAGAGTTTGAAAAATC
TTTTAAGATCGTTGCTGAAGGAGACGACGGATCAGATGTGCTTGAGCTTGTCGAAAGACACAGACCCGATGTGGTCTTAA
TGGATATTAATATGCCTGGCGTAAACGGTGTAGAGGCAACGAAACAATTGGTGGATGCCTATCCGAAAACGAAAGTGATC
ATTTTATCCATTCATGATGATGAAAATTATGTGGCGCACGCTTTAACATCAGGAGCGCGCGGCTATCTTTTGAAAGAAAT
GGATGCGGATGCTCTGATTGAAGCCGTCAAAGTCGTGGCAGAGGGTGGATCGTATTTGCATCCAAAAGTTACTCATAATT
TGATCGCCGACTATCGTCGACTCACTTCCAGCGATCGAAAAAAAGGCTTTCAGCAAGGCGAAGTGCGGCGCCCCTATCAT
TTATTAACGAAACGCGAATGTGAAGTTCTCCAGCTGCTGGCGGACGGAAAAAGCAACAGGGCAATAGGCGAAGCGCTGTA
TATCAGCGAAAAAACAGTAAAAAACCATGTAAGTAATATTTTGCAAAAAATGAATGTGAACGACCGCACACAAGCAGTCG
TAACCGCCATTAAAAGAGGTTGGGTAGAAGTACGCTAG
ATGGCAACGAAGATTGTCATAATCGATGACCATCAATTATTCCGTGAAGGAGTAAAACGAATATTAGAGTTTGAAAAATC
TTTTAAGATCGTTGCTGAAGGAGACGACGGATCAGATGTGCTTGAGCTTGTCGAAAGACACAGACCCGATGTGGTCTTAA
TGGATATTAATATGCCTGGCGTAAACGGTGTAGAGGCAACGAAACAATTGGTGGATGCCTATCCGAAAACGAAAGTGATC
ATTTTATCCATTCATGATGATGAAAATTATGTGGCGCACGCTTTAACATCAGGAGCGCGCGGCTATCTTTTGAAAGAAAT
GGATGCGGATGCTCTGATTGAAGCCGTCAAAGTCGTGGCAGAGGGTGGATCGTATTTGCATCCAAAAGTTACTCATAATT
TGATCGCCGACTATCGTCGACTCACTTCCAGCGATCGAAAAAAAGGCTTTCAGCAAGGCGAAGTGCGGCGCCCCTATCAT
TTATTAACGAAACGCGAATGTGAAGTTCTCCAGCTGCTGGCGGACGGAAAAAGCAACAGGGCAATAGGCGAAGCGCTGTA
TATCAGCGAAAAAACAGTAAAAAACCATGTAAGTAATATTTTGCAAAAAATGAATGTGAACGACCGCACACAAGCAGTCG
TAACCGCCATTAAAAGAGGTTGGGTAGAAGTACGCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| degU | Bacillus subtilis subsp. subtilis str. 168 |
76.786 |
99.556 |
0.764 |