Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BSM4216_RS02030 Genome accession   NZ_CP012024
Coordinates   424504..425670 (+) Length   388 a.a.
NCBI ID   WP_048622550.1    Uniprot ID   -
Organism   Bacillus smithii strain DSM 4216     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 419504..430670
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSM4216_RS02015 (BSM4216_0471) - 420681..421724 (+) 1044 WP_004439633.1 MraY family glycosyltransferase -
  BSM4216_RS02020 (BSM4216_0472) - 422177..423154 (-) 978 WP_048622549.1 LCP family protein -
  BSM4216_RS02025 (BSM4216_0473) - 423563..424201 (-) 639 WP_004439637.1 YigZ family protein -
  BSM4216_RS02030 (BSM4216_0474) degS 424504..425670 (+) 1167 WP_048622550.1 sensor histidine kinase Regulator
  BSM4216_RS02035 (BSM4216_0475) degU 425810..426487 (+) 678 WP_004439660.1 response regulator transcription factor Regulator
  BSM4216_RS02040 (BSM4216_0476) treR 426531..427253 (-) 723 WP_048622551.1 trehalose operon repressor -
  BSM4216_RS02045 (BSM4216_0479) treC 427705..429372 (-) 1668 WP_048622552.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 388 a.a.        Molecular weight: 44969.07 Da        Isoelectric Point: 9.6600

>NTDB_id=150488 BSM4216_RS02030 WP_048622550.1 424504..425670(+) (degS) [Bacillus smithii strain DSM 4216]
MSLRGIKTEKLDEILDKMISTVNQSKDEIFEIGERCRQDLESGLMELKAIKDEVKQALQQEEELDYQTKQARRRLSEVSK
FFHTYSEKDIRKAYQYAHDLQTKLILTKQKAKQLMERRDDLERRLKNLKNTIERADNLVAQISVVLKYMTSDMKQIGQAL
EDAKLKQEFGLRILEAQEEEKKRLSREIHDGPAQMMANVLMRSDLIEKVYKERGVEEALVEIRNLKNMVRSALYEVRRII
YDLRPMALDDLGLVPALNKFLSTLEEYNRSIQRNTTIRFRNIGLEVRLPSKLEIALFRLIQESVQNALKHSNASEIVVKL
EIGKEKVLAVIKDNGQGFDIHKRKSNSFGILGMKERIELLEGELNIDSKPGKGTVVRLSVPIHVHGKD

Nucleotide


Download         Length: 1167 bp        

>NTDB_id=150488 BSM4216_RS02030 WP_048622550.1 424504..425670(+) (degS) [Bacillus smithii strain DSM 4216]
ATGTCATTAAGAGGTATCAAAACGGAAAAGCTAGATGAGATATTAGATAAAATGATTTCTACAGTCAATCAAAGTAAAGA
TGAAATCTTTGAAATCGGCGAACGATGCCGGCAAGATTTAGAATCGGGATTGATGGAACTAAAAGCGATCAAAGATGAAG
TAAAGCAAGCTCTTCAACAAGAAGAAGAACTTGATTATCAAACTAAACAAGCGAGAAGAAGGCTTTCGGAAGTAAGCAAA
TTTTTTCATACATATTCTGAAAAAGATATCCGAAAAGCTTATCAGTATGCCCATGATTTACAGACGAAATTAATCCTGAC
GAAACAAAAGGCAAAACAGCTGATGGAGCGTCGCGATGATTTGGAACGGCGTCTTAAAAATTTGAAAAATACGATTGAGA
GAGCGGACAATCTTGTGGCTCAAATATCAGTTGTTTTGAAATATATGACCAGCGACATGAAGCAAATTGGCCAAGCGCTT
GAAGATGCGAAGTTGAAGCAGGAGTTTGGCCTTAGGATATTAGAGGCTCAAGAGGAAGAAAAAAAGCGGCTTTCACGCGA
AATCCATGATGGTCCGGCCCAGATGATGGCCAATGTCTTGATGCGCTCGGATTTGATCGAGAAAGTGTACAAAGAAAGAG
GAGTGGAAGAAGCTCTTGTAGAAATCCGCAACTTAAAGAACATGGTTCGCAGTGCGCTATATGAAGTCCGACGCATTATA
TACGATTTGCGGCCAATGGCGCTTGATGATCTGGGCCTGGTCCCGGCTCTGAATAAATTTTTAAGCACTCTTGAGGAGTA
TAATCGATCCATTCAAAGAAATACGACTATTCGCTTTCGAAACATTGGGCTGGAAGTACGGCTCCCTTCAAAGTTGGAAA
TTGCTCTTTTTCGCCTGATTCAAGAATCCGTTCAAAATGCGTTAAAGCATTCAAATGCCAGCGAAATTGTTGTGAAACTG
GAAATTGGGAAAGAGAAGGTATTGGCGGTCATTAAAGACAATGGCCAAGGGTTTGACATTCATAAACGCAAATCAAATTC
GTTTGGGATTCTTGGCATGAAAGAGAGAATAGAACTTTTGGAAGGTGAGTTGAACATTGATTCGAAACCAGGAAAGGGGA
CCGTTGTAAGGTTAAGCGTCCCGATTCATGTTCATGGAAAGGATTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(293-381)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

56.728

97.68

0.554

Multiple sequence alignment