Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   BaDB11_RS21430 Genome accession   NZ_CP014795
Coordinates   4120643..4122691 (+) Length   682 a.a.
NCBI ID   WP_225315891.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCK B11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4115643..4127691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BaDB11_RS21400 spoVM 4116175..4116255 (+) 81 WP_003221545.1 stage V sporulation protein SpoVM -
  BaDB11_RS21405 (BaDB11_04309) rpmB 4116374..4116562 (-) 189 WP_003181685.1 50S ribosomal protein L28 -
  BaDB11_RS21410 (BaDB11_04310) - 4116850..4117212 (+) 363 WP_003181687.1 Asp23/Gls24 family envelope stress response protein -
  BaDB11_RS21415 (BaDB11_04311) - 4117230..4118900 (+) 1671 WP_061578501.1 DAK2 domain-containing protein -
  BaDB11_RS21420 (BaDB11_04312) sdaAB 4119082..4119744 (+) 663 WP_003181691.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  BaDB11_RS21425 (BaDB11_04313) sdaAA 4119763..4120665 (+) 903 WP_003181693.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  BaDB11_RS21430 (BaDB11_04314) recG 4120643..4122691 (+) 2049 WP_225315891.1 ATP-dependent DNA helicase RecG Machinery gene
  BaDB11_RS21435 (BaDB11_04315) fapR 4122808..4123374 (+) 567 WP_003181698.1 transcription factor FapR -
  BaDB11_RS21440 (BaDB11_04316) plsX 4123392..4124384 (+) 993 WP_003181700.1 phosphate acyltransferase PlsX -
  BaDB11_RS21445 (BaDB11_04317) fabD 4124402..4125361 (+) 960 WP_003181702.1 ACP S-malonyltransferase -
  BaDB11_RS21450 (BaDB11_04318) fabG 4125348..4126091 (+) 744 WP_003181704.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  BaDB11_RS21455 (BaDB11_04319) acpP 4126168..4126401 (+) 234 WP_003181706.1 acyl carrier protein -
  BaDB11_RS21460 (BaDB11_04320) rnc 4126543..4127292 (+) 750 WP_009328527.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 77599.08 Da        Isoelectric Point: 7.3550

>NTDB_id=150256 BaDB11_RS21430 WP_225315891.1 4120643..4122691(+) (recG) [Bacillus licheniformis strain SCK B11]
MEHNLQLSISVIKGVGTETEKTLNELGIYTVLDLLNYFPYRYDDYELRDLEDVAHDERVTVEGKVHSEPSLAYYGKKRSR
LTFRLLVGNYLITAVCFNRPYLKKKLAIGSIVTVTGKWDKHRQSVMVQELKNGPHQGDQSIEPVYSVKENITVKTMRKLI
QEAVRSHLPFAEDPLPEKLRTAYKLLSYQEAVKAMHKPESREALKHARRRFVYEEFLLFQLKMQALRKFEREASDGISHT
FRLEDVNSFVKSLPFPLTNAQAKALDDILRDMASGYKMNRLLQGDVGSGKTAVAAIALYASVLSGFQGAMMVPTEILAEQ
HADSLVSLFEQHDVNVALLTSSVKGKRRRELLDRLKEGEIDILVGTHALIQDDVHFKQLGLVITDEQHRFGVEQRKKLRS
KGKDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWVKHDMLERILAFIDKELKKGRQAYVICPLIEESD
KLDVQNAIDVHSMLTHAFRGRWQIGLMHGKLSNDEKEQVMRQFSKNECQILVSTTVVEVGVNVPNATVMLIYDADRFGLS
QLHQLRGRVGRGDHQSYCILMADPKSETGKERMSIMSETTDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARRDAAELVSSKAFWTDAEYKSLREHLQNSGVMDGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=150256 BaDB11_RS21430 WP_225315891.1 4120643..4122691(+) (recG) [Bacillus licheniformis strain SCK B11]
GTGGAACACAATCTGCAACTTAGTATATCTGTTATAAAAGGCGTCGGGACGGAAACGGAAAAAACGTTGAACGAGCTCGG
AATCTATACGGTTCTCGATCTTTTAAACTACTTCCCGTACCGATATGACGATTATGAATTGCGCGATTTGGAAGATGTGG
CACACGATGAACGAGTGACGGTGGAAGGGAAGGTTCACAGCGAGCCTTCTCTTGCCTATTACGGGAAAAAGCGGAGCCGT
CTCACGTTCCGGCTTTTGGTCGGGAACTATTTGATCACAGCGGTTTGCTTTAACAGGCCTTATTTGAAAAAAAAGCTTGC
GATCGGCTCGATTGTTACCGTAACCGGAAAATGGGACAAGCACAGACAATCCGTGATGGTGCAAGAGCTGAAAAACGGGC
CGCACCAGGGTGATCAGTCGATTGAACCCGTATACTCCGTCAAAGAAAACATCACCGTAAAGACGATGAGGAAATTGATT
CAGGAAGCTGTCCGCAGCCATTTGCCGTTTGCCGAAGATCCTCTTCCGGAAAAGCTTCGGACCGCCTACAAACTTCTGTC
TTACCAGGAGGCGGTAAAGGCGATGCACAAGCCCGAGTCGAGGGAAGCTTTAAAGCATGCGCGGCGCCGTTTTGTATATG
AGGAATTTTTGCTGTTTCAGCTGAAAATGCAGGCTTTGCGAAAGTTCGAGCGGGAAGCGTCCGACGGAATCAGCCACACC
TTTCGGCTCGAAGACGTCAATTCGTTTGTCAAAAGCCTTCCGTTTCCTTTGACAAACGCGCAGGCGAAAGCGCTCGACGA
CATATTAAGGGACATGGCTTCAGGGTATAAAATGAATCGGCTTTTGCAAGGAGACGTCGGTTCAGGCAAAACAGCCGTCG
CCGCGATTGCGCTATACGCCTCGGTGCTTTCCGGATTCCAGGGGGCGATGATGGTTCCGACCGAAATACTGGCGGAACAG
CACGCCGATTCGCTTGTATCCCTCTTTGAGCAGCACGACGTCAATGTGGCGCTTTTAACAAGCTCTGTGAAAGGGAAAAG
GAGAAGAGAGCTTTTAGACAGATTAAAAGAAGGAGAAATTGATATTTTGGTGGGGACGCACGCCCTTATTCAGGACGATG
TCCACTTTAAACAGCTCGGGCTCGTGATCACCGATGAACAGCACCGCTTCGGCGTCGAGCAAAGAAAAAAACTGAGAAGC
AAAGGGAAAGATCCCGATGTCTTGTTTATGACGGCGACGCCGATTCCGAGAACACTGGCGATCACGGTTTTCGGGGAAAT
GGATGTGTCCGTCATCGATGAAATGCCGGCTGGGCGAAAGCGGATCGAGACGTATTGGGTAAAGCACGACATGCTCGAAC
GGATTCTCGCGTTTATCGATAAAGAACTGAAAAAAGGCAGACAGGCGTATGTGATCTGTCCCTTGATTGAAGAGTCGGAC
AAGCTCGACGTTCAAAATGCAATTGATGTGCACAGCATGCTGACTCATGCCTTCAGGGGAAGATGGCAGATCGGTCTCAT
GCACGGAAAGCTGTCAAATGACGAGAAAGAACAGGTAATGAGGCAGTTCAGCAAAAACGAATGCCAGATTCTCGTTTCCA
CAACCGTCGTTGAAGTCGGGGTAAACGTTCCGAATGCGACGGTCATGCTGATCTATGATGCCGACCGGTTCGGTCTTTCC
CAGCTGCATCAGCTTCGCGGCCGGGTCGGACGGGGAGATCACCAGTCGTATTGCATCCTGATGGCAGACCCGAAATCTGA
GACGGGAAAAGAGCGCATGAGCATCATGTCTGAGACGACGGACGGCTTTGAGCTTTCTGAAAAAGATCTTGAACTCAGAG
GGCCCGGGGACTTTTTCGGCAAGAAACAGAGCGGGATGCCGGAGTTTAAAGTCGCCGACATGGTTCACGACTACCGCGCG
CTGGAAACGGCAAGAAGAGACGCTGCAGAACTTGTCTCTTCAAAAGCGTTCTGGACGGATGCCGAATATAAAAGCCTGCG
GGAACACTTGCAAAACAGCGGGGTTATGGACGGAGAAAAGCTGAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

80.938

100

0.809

  recG/mmsA Streptococcus pneumoniae R6

49.185

98.974

0.487

  recG/mmsA Streptococcus pneumoniae R36A

49.185

98.974

0.487

  recG Neisseria meningitidis strain C311

39.571

95.601

0.378