Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   B34_RS05945 Genome accession   NZ_CP014793
Coordinates   1091514..1091879 (-) Length   121 a.a.
NCBI ID   WP_080624019.1    Uniprot ID   -
Organism   Bacillus licheniformis strain SCDB 34     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1086514..1096879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B34_RS05905 (B34_01198) - 1086810..1087604 (+) 795 WP_061578400.1 YqhG family protein -
  B34_RS05910 (B34_01199) sinI 1087795..1087971 (+) 177 WP_003183444.1 anti-repressor SinI Regulator
  B34_RS05915 (B34_01200) sinR 1088005..1088340 (+) 336 WP_006637528.1 transcriptional regulator SinR Regulator
  B34_RS05920 (B34_01201) tasA 1088445..1089239 (-) 795 WP_003183447.1 biofilm matrix protein TasA -
  B34_RS05925 (B34_01202) sipW 1089313..1089897 (-) 585 WP_003183449.1 signal peptidase I SipW -
  B34_RS05930 (B34_01203) tapA 1089894..1090622 (-) 729 WP_003183451.1 amyloid fiber anchoring/assembly protein TapA -
  B34_RS05935 (B34_01204) - 1090899..1091219 (+) 321 WP_003183454.1 YqzG/YhdC family protein -
  B34_RS05940 (B34_01205) - 1091243..1091425 (-) 183 WP_003183456.1 YqzE family protein -
  B34_RS05945 (B34_01206) comGG 1091514..1091879 (-) 366 WP_080624019.1 competence type IV pilus minor pilin ComGG Machinery gene
  B34_RS05950 (B34_01207) comGF 1091892..1092380 (-) 489 WP_011201694.1 competence type IV pilus minor pilin ComGF -
  B34_RS05955 comGE 1092289..1092636 (-) 348 WP_026699160.1 competence type IV pilus minor pilin ComGE -
  B34_RS05960 (B34_01208) comGD 1092620..1093057 (-) 438 WP_071583679.1 competence type IV pilus minor pilin ComGD Machinery gene
  B34_RS05965 (B34_01209) comGC 1093063..1093326 (-) 264 WP_080624020.1 competence type IV pilus major pilin ComGC Machinery gene
  B34_RS05970 (B34_01210) - 1093452..1094141 (+) 690 WP_080624021.1 hypothetical protein -
  B34_RS05975 (B34_01211) - 1094308..1095048 (+) 741 WP_080624022.1 helix-turn-helix domain-containing protein -
  B34_RS05980 (B34_01212) - 1095148..1096212 (-) 1065 WP_080624023.1 hypothetical protein -
  B34_RS05985 (B34_01213) - 1096238..1096564 (-) 327 WP_080624024.1 hypothetical protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13731.61 Da        Isoelectric Point: 9.5039

>NTDB_id=149876 B34_RS05945 WP_080624019.1 1091514..1091879(-) (comGG) [Bacillus licheniformis strain SCDB 34]
MKNSKGFIYPAAVFAAVICMLCASHSAALLTNQRTFAQQTKEFHIQQNLLQNGILHALSHIHEETKEKVQKQHGLISYSV
STAHQQLTRVQIQVTTASGTETSAQFQYDLRNQKITQWKEY

Nucleotide


Download         Length: 366 bp        

>NTDB_id=149876 B34_RS05945 WP_080624019.1 1091514..1091879(-) (comGG) [Bacillus licheniformis strain SCDB 34]
GTGAAAAATTCAAAAGGATTCATTTATCCCGCTGCTGTTTTCGCAGCTGTGATTTGCATGCTCTGCGCGAGTCACTCAGC
CGCTTTATTAACGAATCAGCGAACGTTTGCACAGCAAACAAAAGAATTTCACATTCAGCAAAACCTTCTCCAAAATGGAA
TTCTCCATGCCTTGTCCCATATTCACGAAGAGACAAAAGAAAAAGTTCAAAAACAGCATGGCTTGATATCGTATTCTGTC
AGCACGGCTCATCAGCAGCTCACACGAGTCCAGATTCAGGTAACGACAGCTTCCGGCACAGAAACAAGCGCTCAATTTCA
ATATGATTTAAGAAATCAAAAAATCACGCAGTGGAAGGAATATTAA

Domains

Predicted by InterProScan.

ComG operon protein 7 (ComGG)

(31-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Bacillus subtilis subsp. subtilis str. 168

35.484

100

0.364