Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | B34_RS05965 | Genome accession | NZ_CP014793 |
| Coordinates | 1093063..1093326 (-) | Length | 87 a.a. |
| NCBI ID | WP_080624020.1 | Uniprot ID | - |
| Organism | Bacillus licheniformis strain SCDB 34 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1088063..1098326
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B34_RS05920 (B34_01201) | tasA | 1088445..1089239 (-) | 795 | WP_003183447.1 | biofilm matrix protein TasA | - |
| B34_RS05925 (B34_01202) | sipW | 1089313..1089897 (-) | 585 | WP_003183449.1 | signal peptidase I SipW | - |
| B34_RS05930 (B34_01203) | tapA | 1089894..1090622 (-) | 729 | WP_003183451.1 | amyloid fiber anchoring/assembly protein TapA | - |
| B34_RS05935 (B34_01204) | - | 1090899..1091219 (+) | 321 | WP_003183454.1 | YqzG/YhdC family protein | - |
| B34_RS05940 (B34_01205) | - | 1091243..1091425 (-) | 183 | WP_003183456.1 | YqzE family protein | - |
| B34_RS05945 (B34_01206) | comGG | 1091514..1091879 (-) | 366 | WP_080624019.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| B34_RS05950 (B34_01207) | comGF | 1091892..1092380 (-) | 489 | WP_011201694.1 | competence type IV pilus minor pilin ComGF | - |
| B34_RS05955 | comGE | 1092289..1092636 (-) | 348 | WP_026699160.1 | competence type IV pilus minor pilin ComGE | - |
| B34_RS05960 (B34_01208) | comGD | 1092620..1093057 (-) | 438 | WP_071583679.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| B34_RS05965 (B34_01209) | comGC | 1093063..1093326 (-) | 264 | WP_080624020.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| B34_RS05970 (B34_01210) | - | 1093452..1094141 (+) | 690 | WP_080624021.1 | hypothetical protein | - |
| B34_RS05975 (B34_01211) | - | 1094308..1095048 (+) | 741 | WP_080624022.1 | helix-turn-helix domain-containing protein | - |
| B34_RS05980 (B34_01212) | - | 1095148..1096212 (-) | 1065 | WP_080624023.1 | hypothetical protein | - |
| B34_RS05985 (B34_01213) | - | 1096238..1096564 (-) | 327 | WP_080624024.1 | hypothetical protein | - |
| B34_RS05990 (B34_01214) | - | 1096838..1097695 (+) | 858 | WP_080624025.1 | SMI1/KNR4 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 9562.26 Da Isoelectric Point: 9.6323
>NTDB_id=149878 B34_RS05965 WP_080624020.1 1093063..1093326(-) (comGC) [Bacillus licheniformis strain SCDB 34]
MLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLKCPNGKAIKIS
NGKAQAD
MLVVMLVISILLLITIPNVTKHNQSIQKKGCEGLINMVQAQITAYQMDHDGKTPNRAELESEGYIKKNLKCPNGKAIKIS
NGKAQAD
Nucleotide
Download Length: 264 bp
>NTDB_id=149878 B34_RS05965 WP_080624020.1 1093063..1093326(-) (comGC) [Bacillus licheniformis strain SCDB 34]
ATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCCGAATGTGACCAAGCATAACCAAAGCATCCA
AAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGGCCTATCAGATGGATCATGACGGGAAAACGC
CGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAGTGTCCGAATGGGAAAGCAATTAAAATTTCA
AACGGCAAAGCACAGGCTGATTGA
ATGTTAGTCGTCATGCTCGTTATCTCCATCCTGCTGTTGATCACCATTCCGAATGTGACCAAGCATAACCAAAGCATCCA
AAAGAAAGGATGCGAAGGATTAATCAATATGGTTCAAGCGCAGATCACGGCCTATCAGATGGATCATGACGGGAAAACGC
CGAACAGGGCGGAGCTTGAATCTGAAGGTTACATAAAAAAGAACTTAAAGTGTCCGAATGGGAAAGCAATTAAAATTTCA
AACGGCAAAGCACAGGCTGATTGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Bacillus subtilis subsp. subtilis str. 168 |
63.38 |
81.609 |
0.517 |