Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   CDIF1296T_RS04195 Genome accession   NZ_CP011968
Coordinates   809073..809780 (+) Length   235 a.a.
NCBI ID   WP_009895700.1    Uniprot ID   -
Organism   Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 804073..814780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDIF1296T_RS04165 (CDIF1296T_00826) cdd1 804868..805113 (+) 246 WP_009888450.1 protein Cdd1 -
  CDIF1296T_RS04170 (CDIF1296T_00827) - 805331..805600 (-) 270 WP_003426848.1 DUF3795 domain-containing protein -
  CDIF1296T_RS04180 (CDIF1296T_00828) - 806478..807215 (-) 738 WP_003439186.1 ABC transporter permease -
  CDIF1296T_RS04185 (CDIF1296T_00829) - 807227..807988 (-) 762 WP_009895698.1 ABC transporter permease -
  CDIF1296T_RS04190 (CDIF1296T_00830) - 807988..808911 (-) 924 WP_025985748.1 ABC transporter ATP-binding protein -
  CDIF1296T_RS04195 (CDIF1296T_00831) scnR 809073..809780 (+) 708 WP_009895700.1 response regulator transcription factor Regulator
  CDIF1296T_RS04200 (CDIF1296T_00832) - 809825..811231 (+) 1407 WP_009895701.1 sensor histidine kinase -
  CDIF1296T_RS04205 (CDIF1296T_00833) - 812991..813380 (+) 390 WP_003426867.1 BlaI/MecI/CopY family transcriptional regulator -
  CDIF1296T_RS04210 (CDIF1296T_00834) - 814179..814649 (+) 471 WP_009895702.1 VOC family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26702.18 Da        Isoelectric Point: 6.1479

>NTDB_id=149747 CDIF1296T_RS04195 WP_009895700.1 809073..809780(+) (scnR) [Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T]
MESIKDKKILVVDDHKELLKMIDEILRKEGFSRVFLASSYEEAVKVFRNVKPDCAILDVVLPDGDGFSIMRKIRETSKIP
VIFLSARGEDEDRLIGLGLGADDYIVKPFLPKELTLRLVGILNRVYVPIEEEELPVFKLGDSVVVNLNSACVEKEGQEIS
LTAKEHSLLLKLYENKGRIVTNDSLCQAIWGDDMYGYENTLMVHVRRVREKIEKTPSTPKHLITVRGLGYKLMIN

Nucleotide


Download         Length: 708 bp        

>NTDB_id=149747 CDIF1296T_RS04195 WP_009895700.1 809073..809780(+) (scnR) [Clostridioides difficile ATCC 9689 = DSM 1296 strain DSM 1296T]
ATGGAGTCAATAAAAGATAAAAAAATACTTGTGGTTGATGACCACAAGGAATTATTAAAAATGATAGATGAAATCCTGAG
AAAAGAGGGATTTAGTAGAGTATTTTTAGCATCAAGTTATGAGGAAGCTGTTAAGGTATTTAGAAATGTAAAGCCAGATT
GTGCAATTTTAGATGTTGTATTGCCAGATGGAGATGGTTTTTCTATTATGAGAAAAATTAGAGAGACATCTAAAATACCA
GTGATTTTTCTCTCTGCAAGAGGTGAAGATGAAGATAGATTGATTGGTTTGGGCTTAGGGGCTGACGATTATATAGTAAA
GCCATTTTTACCAAAGGAACTTACTTTAAGGCTTGTGGGTATATTAAATCGTGTATATGTGCCTATAGAAGAAGAGGAGT
TGCCAGTATTTAAACTGGGAGATTCTGTTGTTGTGAATTTAAATAGTGCATGTGTTGAGAAAGAAGGGCAAGAGATTTCT
TTAACAGCTAAAGAGCATTCGTTGCTTTTAAAGTTGTATGAAAATAAAGGGAGAATTGTTACTAATGATTCACTATGTCA
AGCCATTTGGGGAGATGATATGTATGGATATGAAAATACCCTTATGGTTCATGTTAGAAGGGTTAGAGAGAAGATAGAAA
AAACTCCATCTACACCTAAACATCTTATTACAGTAAGAGGTCTTGGATATAAGTTGATGATTAATTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

48.918

98.298

0.481
  micA Streptococcus pneumoniae Cp1015

40

100

0.4
  vicR Streptococcus mutans UA159

38.362

98.723

0.379

Multiple sequence alignment