Detailed information    

insolico Bioinformatically predicted

Overview


Name   recG   Type   Machinery gene
Locus tag   A1R12_RS07825 Genome accession   NZ_CP014783
Coordinates   1581365..1583413 (+) Length   682 a.a.
NCBI ID   WP_040238168.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain B15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1576365..1588413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A1R12_RS07795 (A1R12_07795) spoVM 1577009..1577089 (+) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  A1R12_RS07800 (A1R12_07800) rpmB 1577167..1577355 (-) 189 WP_003154328.1 50S ribosomal protein L28 -
  A1R12_RS07805 (A1R12_07805) - 1577614..1577976 (+) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  A1R12_RS07810 (A1R12_07810) - 1577992..1579659 (+) 1668 WP_039251530.1 DAK2 domain-containing protein -
  A1R12_RS07815 (A1R12_07815) sdaAB 1579802..1580464 (+) 663 WP_003154325.1 L-serine ammonia-lyase, iron-sulfur-dependent subunit beta -
  A1R12_RS07820 (A1R12_07820) sdaAA 1580485..1581387 (+) 903 WP_012117539.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  A1R12_RS07825 (A1R12_07825) recG 1581365..1583413 (+) 2049 WP_040238168.1 ATP-dependent DNA helicase RecG Machinery gene
  A1R12_RS07830 (A1R12_07830) fapR 1583520..1584086 (+) 567 WP_003154320.1 transcription factor FapR -
  A1R12_RS07835 (A1R12_07835) plsX 1584100..1585098 (+) 999 WP_007409758.1 phosphate acyltransferase PlsX -
  A1R12_RS07840 (A1R12_07840) fabD 1585117..1586070 (+) 954 WP_015417458.1 ACP S-malonyltransferase -
  A1R12_RS07845 (A1R12_07845) fabG 1586063..1586803 (+) 741 WP_003154312.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  A1R12_RS07850 (A1R12_07850) acpP 1586888..1587121 (+) 234 WP_003154310.1 acyl carrier protein -
  A1R12_RS07855 (A1R12_07855) rncS 1587260..1588009 (+) 750 WP_007409760.1 ribonuclease III -

Sequence


Protein


Download         Length: 682 a.a.        Molecular weight: 77895.17 Da        Isoelectric Point: 6.7929

>NTDB_id=149664 A1R12_RS07825 WP_040238168.1 1581365..1583413(+) (recG) [Bacillus amyloliquefaciens strain B15]
MTHHQQTSIAEIKGIGPETEKTLHELGIYDISDLLNYFPYRYDDYELRDLEEVKHEERVTVEGKVHSEPSLTYYGKKRNR
LTFRVLVGNYLITAVCFNRPYLKKKLTLGSVVTISGKWDKHRQTVSVQELKNGPHQEDKSIEPVYSVKENVTVKMMRRFI
KEALQHHLDSAADPLPEKLRIRYKLPDYKHALQTMHQPETRESLQQARRRFVYEEFLLFQLKMQAFRKAEREQSKGISHV
FPAEKLAAFTDSLPFSLTTAQTRVLREITADMTSPYRMNRLLQGDVGSGKTAVAAIALYAAILSGYQGALMVPTEILAEQ
HADSLVSLFANEDVNIALLTSSVKGKRRRELLERLALGEIDILVGTHALIQDEVEFKALSFVITDEQHRFGVEQRKKLKN
KGQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKQIETYWVKHDMLERILAFIEKELKQGRQAYIICPLIEESD
KLDVQNAIDVYNMLSDVYRGKWNVGLMHGKLHSDEKDQVMREFSANQCQVLVSTTVVEVGVNVPNATIMVIYDADRFGLS
QLHQLRGRVGRGDHQSFCILMADPKSETGKERMRIMSETNDGFELSEKDLELRGPGDFFGKKQSGMPEFKVADMVHDYRA
LETARQDAANLVSSEAFWKDDEYRMLRGQLLSSGVLEGEKLS

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=149664 A1R12_RS07825 WP_040238168.1 1581365..1583413(+) (recG) [Bacillus amyloliquefaciens strain B15]
GTGACACACCATCAGCAAACTAGTATAGCGGAAATTAAGGGCATTGGGCCGGAAACAGAAAAAACATTGCACGAACTTGG
TATCTATGACATTTCTGATCTTCTGAATTATTTCCCTTACCGTTATGACGACTATGAGCTGAGGGATTTAGAAGAAGTAA
AACATGAAGAAAGAGTGACGGTAGAAGGGAAGGTTCATTCAGAACCTTCTCTTACCTATTACGGCAAAAAACGAAACAGG
CTGACATTCAGGGTGCTTGTCGGCAATTATTTAATTACCGCGGTCTGCTTTAACCGTCCCTACTTAAAAAAGAAACTGAC
GTTAGGTTCTGTCGTCACGATATCCGGGAAATGGGATAAACACAGACAGACCGTTTCCGTGCAGGAATTAAAAAACGGTC
CTCATCAAGAAGATAAAAGCATTGAGCCTGTTTATTCCGTTAAAGAAAACGTCACCGTAAAAATGATGAGACGGTTTATT
AAGGAAGCGCTGCAGCATCATTTGGACAGTGCGGCTGATCCGCTTCCTGAAAAATTGAGAATCCGCTACAAGCTTCCTGA
CTACAAACATGCCCTGCAGACGATGCATCAGCCTGAAACGAGGGAATCGTTACAGCAGGCAAGACGCCGGTTTGTTTACG
AAGAATTCTTATTATTTCAGCTGAAAATGCAGGCGTTCCGTAAAGCGGAAAGGGAACAGTCAAAAGGCATCAGCCATGTG
TTTCCGGCTGAAAAGCTCGCCGCTTTCACAGACAGCCTGCCGTTTTCGCTCACAACCGCACAGACGCGTGTGCTTCGGGA
AATTACCGCTGATATGACATCCCCTTACCGAATGAACCGTCTGCTGCAAGGTGATGTCGGTTCAGGGAAAACGGCCGTCG
CCGCCATCGCTTTGTACGCTGCGATTTTGTCGGGGTATCAGGGGGCATTAATGGTGCCGACTGAAATTCTGGCCGAACAG
CATGCAGATTCTCTCGTATCGTTGTTTGCAAATGAAGATGTAAATATCGCGCTTTTGACGAGTTCTGTCAAAGGAAAGCG
GCGCAGGGAGCTTTTGGAGCGGCTTGCTCTCGGAGAGATTGATATTTTAGTAGGGACCCATGCTTTAATCCAGGATGAAG
TGGAATTCAAAGCGCTGAGCTTTGTTATTACGGACGAGCAGCACCGGTTCGGGGTCGAACAGCGCAAAAAACTCAAGAAT
AAAGGTCAGGATCCGGATGTGCTGTTTATGACAGCTACTCCGATTCCGAGAACGCTGGCCATTACCGTCTTCGGAGAAAT
GGATGTTTCCGTGATAGATGAAATGCCCGCGGGGCGAAAACAAATCGAAACGTATTGGGTGAAACACGACATGCTGGAGC
GGATTTTGGCTTTTATAGAAAAAGAGCTGAAGCAGGGAAGGCAAGCCTATATTATCTGCCCGCTCATTGAAGAGTCGGAT
AAACTGGATGTACAGAATGCGATTGACGTATATAACATGCTGTCTGACGTTTACCGCGGTAAATGGAATGTCGGCCTGAT
GCACGGGAAGCTCCATTCTGATGAAAAAGATCAGGTGATGAGAGAATTCAGCGCCAATCAATGTCAGGTACTTGTGTCAA
CAACCGTCGTAGAAGTCGGCGTGAACGTGCCGAATGCGACGATTATGGTCATCTATGACGCCGACCGTTTCGGGTTATCT
CAGCTCCATCAGCTCCGCGGCCGGGTCGGGCGGGGAGACCACCAATCTTTCTGCATCTTGATGGCAGATCCGAAATCCGA
AACCGGGAAGGAACGGATGAGAATCATGTCGGAGACAAACGACGGCTTCGAGCTGTCTGAAAAGGACCTTGAACTGCGCG
GCCCCGGTGATTTCTTCGGAAAAAAACAGAGCGGTATGCCCGAGTTCAAGGTGGCGGATATGGTTCATGACTACAGAGCT
TTGGAAACGGCCCGCCAGGATGCGGCCAATCTGGTGTCTTCAGAGGCTTTTTGGAAAGATGACGAATACCGCATGCTGCG
CGGTCAATTACTTTCAAGCGGCGTCCTGGAAGGGGAGAAATTAAGCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

89.589

100

0.896

  recG/mmsA Streptococcus pneumoniae R6

49.925

97.801

0.488

  recG/mmsA Streptococcus pneumoniae R36A

49.925

97.801

0.488

  recG Neisseria meningitidis strain C311

39.204

95.748

0.375