Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACP90_RS15055 Genome accession   NZ_CP011927
Coordinates   3244581..3245135 (-) Length   184 a.a.
NCBI ID   WP_055654172.1    Uniprot ID   A0A0M6XWI4
Organism   Labrenzia sp. CP4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3239581..3250135
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACP90_RS15040 (ACP90_15055) - 3240387..3241541 (+) 1155 WP_062488800.1 zinc ABC transporter substrate-binding protein -
  ACP90_RS15045 (ACP90_15060) - 3241622..3243511 (-) 1890 WP_208993327.1 L,D-transpeptidase family protein -
  ACP90_RS15050 (ACP90_15065) - 3244043..3244519 (+) 477 WP_062488802.1 hypothetical protein -
  ACP90_RS15055 (ACP90_15070) ssb 3244581..3245135 (-) 555 WP_055654172.1 single-stranded DNA-binding protein Machinery gene
  ACP90_RS15060 (ACP90_15075) uvrA 3245720..3248650 (+) 2931 WP_022998707.1 excinuclease ABC subunit UvrA -
  ACP90_RS28015 - 3248895..3249044 (+) 150 WP_006933294.1 DUF1127 domain-containing protein -
  ACP90_RS28020 - 3249876..3250025 (+) 150 WP_006933293.1 DUF1127 domain-containing protein -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 18996.62 Da        Isoelectric Point: 5.2868

>NTDB_id=149336 ACP90_RS15055 WP_055654172.1 3244581..3245135(-) (ssb) [Labrenzia sp. CP4]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLRIATSESWRDRNTGERREKTEWHRVVIFNDGLCKVAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDRYSTEIVLQGFNSNLTMLDGRGEGGGASGGLPDYGNDSQGGGGGGFGGGGSGSGGNFGGGYGGG
SSSGGGYGGPSGGGGGPMDDEIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=149336 ACP90_RS15055 WP_055654172.1 3244581..3245135(-) (ssb) [Labrenzia sp. CP4]
ATGGCGGGCAGCGTCAACAAAGTAATTTTGGTCGGCAATCTGGGAGCAGACCCGGAAATCCGCCGTACGCAGGATGGCCG
CCCGATCGCCAATCTCCGGATTGCGACGTCGGAATCCTGGCGCGACCGCAACACCGGTGAGCGTCGTGAAAAGACGGAGT
GGCACCGTGTCGTGATTTTCAACGACGGTCTTTGCAAAGTTGCGGAGCAATATCTGCGCAAGGGATCAAAGGTTTATCTC
GAAGGCCAGCTTCAGACCCGCAAATGGCAGGATCAGTCCGGTCAGGACCGGTACTCCACCGAGATCGTGCTGCAGGGCTT
CAACTCCAACCTGACCATGCTTGACGGCCGCGGCGAAGGTGGCGGTGCATCCGGCGGTCTTCCCGATTACGGCAATGACT
CACAAGGCGGCGGCGGAGGTGGCTTCGGCGGCGGCGGTTCCGGTTCCGGCGGGAATTTCGGTGGTGGCTATGGCGGCGGT
TCCAGCAGCGGTGGCGGTTACGGCGGTCCGTCCGGTGGCGGTGGCGGCCCCATGGACGACGAAATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M6XWI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.969

100

0.516
  ssb Vibrio cholerae strain A1552

50.549

98.913

0.5
  ssb Neisseria gonorrhoeae MS11

36.813

98.913

0.364

Multiple sequence alignment