Detailed information    

insolico Bioinformatically predicted

Overview


Name   stkP   Type   Regulator
Locus tag   AS588_RS07455 Genome accession   NZ_CP014700
Coordinates   1623018..1624961 (-) Length   647 a.a.
NCBI ID   WP_003154335.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain S499     
Function   require for competence development; phosphorylate ComE (predicted from homology)   
Competence regulation

Genomic Context


Location: 1618018..1629961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AS588_RS07425 (AS588_07425) - 1619694..1620056 (-) 363 WP_003154327.1 Asp23/Gls24 family envelope stress response protein -
  AS588_RS07430 (AS588_07430) rpmB 1620315..1620503 (+) 189 WP_003154328.1 50S ribosomal protein L28 -
  AS588_RS07435 (AS588_07435) spoVM 1620581..1620661 (-) 81 WP_003154329.1 stage V sporulation protein SpoVM -
  AS588_RS07440 (AS588_07440) - 1620748..1621392 (-) 645 WP_015388245.1 thiamine diphosphokinase -
  AS588_RS07445 (AS588_07445) rpe 1621458..1622111 (-) 654 WP_015388246.1 ribulose-phosphate 3-epimerase -
  AS588_RS07450 (AS588_07450) rsgA 1622113..1623003 (-) 891 WP_003154333.1 ribosome small subunit-dependent GTPase A -
  AS588_RS07455 (AS588_07455) stkP 1623018..1624961 (-) 1944 WP_003154335.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  AS588_RS07460 (AS588_07460) - 1624955..1625716 (-) 762 WP_015388247.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -
  AS588_RS07465 (AS588_07465) rlmN 1625722..1626813 (-) 1092 WP_003154339.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  AS588_RS07470 (AS588_07470) rsmB 1626817..1628160 (-) 1344 WP_003154341.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  AS588_RS07475 (AS588_07475) fmt 1628147..1629100 (-) 954 WP_003154342.1 methionyl-tRNA formyltransferase -
  AS588_RS07480 (AS588_07480) def 1629105..1629587 (-) 483 WP_003154343.1 peptide deformylase -

Sequence


Protein


Download         Length: 647 a.a.        Molecular weight: 71688.23 Da        Isoelectric Point: 4.9835

>NTDB_id=149136 AS588_RS07455 WP_003154335.1 1623018..1624961(-) (stkP) [Bacillus amyloliquefaciens strain S499]
MLTGKRISGRYHILRPIGGGGMANVFLAEDIILEREVAIKILRFDFVNDIDFIRRFRREAQSASSLDHPNIVSIYDIGEE
GDIYYIVMEYVEGMTLKEYITAHGPLHPKEALSVMEQIVSAIAHAHQNHIVHRDIKPHNILIDHLGHIKVTDFGIATALT
STTITHTNSVLGSVHYLSPEQARGGLATKKSDIYALGIVLFELLTGKIPFDGESAVSIALKHLQTETPSARKWNPSIPQS
VENIILKATAKDPFHRYESAEDMEADIRTAFDAGRLNEQKFSVQDDEEMTKAIPVITDGAKAASQAETPGETDDKEQQPA
KKKKRKWPWVLLAVCFIFIMAAVLAVTVFPSLFMPKDVSVPDVRGMKYEKAEALLEKNGLRADPDITDIEDEKIEEELMV
KTDPKAGSTVKEGSSVKLYKSIGKPKTQLIDVKGRQIGDAKKALKEKGFKHVNVKEENDDSEAGTVIDQDPSAGTDMVAS
DDEVNLTVSLGPADVTLRDLKTYSKEAASGYLEDNGLQLVEKQAHSDDVPEGQVMKQEPSAGTAVKPGSNVEVTFSLGPE
EKPAKTVKEKISIPYEPEHEGDELEVQIAIDDKDHSISDTYDSFKIKEPTEKTIELKIDQGQKGYYQVMVDHKVVSYKTI
EYPKDND

Nucleotide


Download         Length: 1944 bp        

>NTDB_id=149136 AS588_RS07455 WP_003154335.1 1623018..1624961(-) (stkP) [Bacillus amyloliquefaciens strain S499]
GTGCTAACCGGCAAGCGGATCAGCGGGCGTTATCATATCCTCCGGCCCATTGGCGGCGGCGGAATGGCAAACGTTTTTTT
AGCTGAGGACATCATTCTCGAACGTGAAGTCGCAATTAAAATTCTGCGGTTTGACTTTGTGAATGACATTGATTTTATCA
GGCGTTTCAGAAGAGAAGCACAGTCGGCATCAAGCCTCGATCATCCGAATATCGTCAGTATTTACGATATCGGGGAGGAA
GGCGATATTTATTACATTGTCATGGAATATGTGGAAGGCATGACATTAAAGGAATACATAACCGCACACGGACCGCTTCA
TCCGAAAGAAGCGCTGTCCGTTATGGAGCAGATCGTCTCGGCCATCGCCCATGCCCATCAAAACCATATCGTGCACCGGG
ATATTAAACCGCACAATATATTGATAGATCATTTAGGGCATATCAAGGTGACGGATTTCGGCATCGCCACAGCGCTTACG
TCTACGACAATCACACATACGAATTCTGTGCTGGGCTCGGTTCATTATTTGTCTCCGGAGCAGGCGAGAGGCGGTCTGGC
AACGAAAAAATCAGATATTTACGCGCTCGGCATCGTGCTGTTTGAGCTTTTAACAGGCAAAATCCCTTTTGACGGAGAAT
CAGCCGTCAGCATAGCGCTAAAGCACCTGCAAACAGAAACGCCTTCCGCCAGAAAGTGGAACCCTTCCATTCCGCAGAGC
GTTGAAAACATTATTTTAAAGGCAACCGCCAAAGACCCGTTTCACCGCTATGAAAGCGCCGAGGACATGGAGGCGGACAT
CAGAACGGCTTTTGACGCCGGCAGGCTGAATGAACAAAAATTTTCCGTGCAGGATGATGAGGAAATGACAAAAGCCATTC
CCGTTATTACTGACGGCGCAAAAGCCGCGTCTCAGGCGGAAACGCCGGGGGAGACGGATGATAAGGAACAGCAGCCAGCC
AAAAAGAAAAAACGGAAATGGCCGTGGGTTTTGCTGGCCGTCTGTTTCATTTTCATTATGGCGGCTGTTCTTGCGGTCAC
CGTGTTCCCGTCTTTATTTATGCCTAAAGATGTAAGCGTCCCCGACGTACGGGGCATGAAGTACGAAAAAGCGGAAGCCC
TGCTTGAAAAGAACGGGCTCCGGGCTGATCCTGATATAACGGATATTGAAGATGAAAAAATAGAAGAGGAATTAATGGTC
AAAACGGACCCAAAAGCGGGGTCTACCGTTAAAGAAGGCTCTTCTGTAAAACTGTACAAAAGCATCGGAAAACCGAAAAC
CCAGCTGATCGACGTGAAAGGACGGCAGATCGGCGACGCAAAAAAAGCGCTGAAGGAAAAAGGTTTCAAACATGTCAATG
TCAAAGAAGAAAACGATGACAGCGAGGCCGGCACCGTAATTGATCAGGACCCGTCAGCCGGCACCGATATGGTCGCAAGC
GACGATGAAGTCAATCTAACGGTCAGCCTCGGCCCGGCGGACGTTACGCTGAGGGACTTAAAGACTTACAGCAAAGAAGC
GGCTTCAGGGTATCTTGAAGATAACGGCCTGCAGCTTGTTGAAAAACAAGCCCATTCAGATGACGTGCCGGAAGGACAAG
TCATGAAACAAGAGCCGTCAGCCGGCACTGCGGTTAAGCCGGGAAGTAATGTTGAAGTGACGTTCTCGCTCGGACCTGAA
GAAAAACCGGCGAAAACGGTAAAAGAAAAAATCAGCATTCCTTACGAACCCGAACATGAAGGGGACGAGCTTGAAGTGCA
AATCGCCATCGATGATAAGGACCACAGCATCTCTGATACGTATGACTCATTTAAAATAAAAGAGCCGACCGAAAAAACAA
TTGAACTGAAGATTGATCAGGGACAGAAGGGGTATTATCAAGTGATGGTCGATCATAAAGTCGTCAGCTACAAAACGATT
GAATACCCGAAAGATAATGACTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  stkP Streptococcus pneumoniae TIGR4

38.799

95.209

0.369

  stkP Streptococcus pneumoniae D39

38.636

95.209

0.368

  stkP Streptococcus pneumoniae R6

38.636

95.209

0.368

  stkP Streptococcus pneumoniae Rx1

38.474

95.209

0.366


Multiple sequence alignment