Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AYR48_RS13955 Genome accession   NZ_CP014642
Coordinates   2715317..2715949 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain BLK16     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2710317..2720949
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYR48_RS13925 (AYR48_13450) yheS 2710486..2712399 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  AYR48_RS13930 (AYR48_13455) yheT 2712399..2713421 (+) 1023 WP_000057356.1 hydrolase -
  AYR48_RS13935 (AYR48_13460) yheU 2713415..2713633 (+) 219 WP_000907085.1 YheU family protein -
  AYR48_RS13940 (AYR48_13465) prkB 2713687..2714556 (+) 870 WP_001274680.1 phosphoribulokinase -
  AYR48_RS13945 (AYR48_13470) yhfA 2714611..2715015 (-) 405 WP_001148908.1 OsmC family protein -
  AYR48_RS13955 (AYR48_13480) crp 2715317..2715949 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AYR48_RS13960 (AYR48_13485) yhfK 2716000..2718090 (+) 2091 WP_012775971.1 YccS/YhfK family putative transporter -
  AYR48_RS13965 (AYR48_13490) argD 2718157..2719377 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AYR48_RS13970 (AYR48_13495) pabA 2719463..2720026 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  AYR48_RS13975 (AYR48_13500) fic 2720058..2720660 (-) 603 WP_000502522.1 putative adenosine monophosphate-protein transferase Fic -
  AYR48_RS13980 (AYR48_13505) yhfG 2720650..2720817 (-) 168 WP_000736861.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=148958 AYR48_RS13955 WP_000242755.1 2715317..2715949(+) (crp) [Escherichia coli strain BLK16]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=148958 AYR48_RS13955 WP_000242755.1 2715317..2715949(+) (crp) [Escherichia coli strain BLK16]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467