Detailed information NTG0148910

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACG10_RS04925
• Genome accession: NZ_CP011835
• Coordinates: 1063029..1063898 (-)
• Length: 289 a.a.
• NCBI ID: WP_089167359.1
• Uniprot ID: -
• Organism: Azotobacter chroococcum strain B3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1058029..1068898

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACG10_RS04890 (ACG10_04795)	-	1058621..1059919 (-)	1299	WP_089167353.1	NAD(P)/FAD-dependent oxidoreductase	-
ACG10_RS04895 (ACG10_04800)	-	1059995..1060168 (-)	174	WP_039805690.1	DUF3094 family protein	-
ACG10_RS04900 (ACG10_04805)	-	1060482..1060907 (+)	426	WP_089167354.1	GNAT family N-acetyltransferase	-
ACG10_RS04905 (ACG10_04810)	-	1060904..1061371 (+)	468	WP_089167355.1	FAD/FMN-containing dehydrogenase	-
ACG10_RS04910 (ACG10_04815)	-	1061368..1062054 (+)	687	WP_089167356.1	energy-coupling factor ABC transporter permease	-
ACG10_RS04915 (ACG10_04820)	yacG	1062075..1062275 (-)	201	WP_089167357.1	DNA gyrase inhibitor YacG	-
ACG10_RS04920 (ACG10_04825)	coaE	1062272..1062880 (-)	609	WP_089167358.1	dephospho-CoA kinase	-
ACG10_RS04925 (ACG10_04830)	pilD	1063029..1063898 (-)	870	WP_089167359.1	A24 family peptidase	Machinery gene
ACG10_RS04930 (ACG10_04835)	pilC	1063901..1065118 (-)	1218	WP_089169794.1	type II secretion system F family protein	Machinery gene
ACG10_RS04935 (ACG10_04840)	pilB	1065542..1067242 (-)	1701	WP_089167360.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACG10_RS04940 (ACG10_04845)	-	1067801..1068337 (+)	537	WP_089167361.1	pilin	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31599.54 Da
• Isoelectric Point: 7.1351

>NTDB_id=148910 ACG10_RS04925 WP_089167359.1 1063029..1063898(-) (pilD) [Azotobacter chroococcum strain B3]
MSIHDLLAGPGPAFAFWAGLLGLVVGSFLNVVIHRLPKMMLRDWQAQAREVLELPGEAPGEPFNLLLPHSHCPHCGYQIR
PWENIPLLGWLALRGRCSACKAPIGARYPLVELACGLLSAHVAWHYGFGWQAGAMLLLGWGLLAMSLIDYDHQLLPDSLV
LPLLWLGLILNNFGLFVSLEDALWGAVAGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AVLGIVILRLRKAESGTPIPFGPFLALAGWIALLWGERITGSYLQFAGL

Nucleotide

• Length: 870 bp

>NTDB_id=148910 ACG10_RS04925 WP_089167359.1 1063029..1063898(-) (pilD) [Azotobacter chroococcum strain B3]
ATGTCCATTCACGATCTTCTCGCCGGTCCCGGGCCGGCCTTCGCTTTCTGGGCGGGGCTGCTGGGCTTGGTGGTCGGCAG
CTTTCTCAACGTGGTGATCCATCGCCTGCCGAAGATGATGCTGCGCGACTGGCAGGCGCAGGCGCGGGAAGTGCTGGAAC
TGCCCGGCGAGGCACCGGGTGAGCCCTTCAACCTGCTGCTGCCCCACTCGCATTGCCCGCACTGCGGATACCAGATCCGC
CCCTGGGAGAACATCCCGCTGCTCGGCTGGCTGGCCCTGCGCGGCCGCTGCTCGGCCTGCAAGGCGCCGATCGGCGCACG
CTATCCGCTGGTGGAGCTGGCTTGCGGACTACTCTCGGCTCATGTCGCCTGGCATTACGGCTTTGGTTGGCAGGCCGGCG
CCATGCTGCTGCTCGGCTGGGGCCTCTTGGCCATGAGCCTGATCGACTACGATCATCAGCTGCTGCCGGACTCGCTGGTG
CTGCCGCTGCTCTGGCTAGGGCTGATCCTCAACAACTTCGGGCTGTTCGTTTCCCTGGAGGATGCCCTGTGGGGCGCGGT
AGCCGGCTATCTCAGCCTGTGGTCGGTGTACTGGCTGTTCAAGCTGCTCACCGGCAAGGAAGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCGATGCTCGGCGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTCTCCTCGCTGGTCGGC
GCCGTGCTGGGAATCGTCATCCTGCGCCTGCGCAAGGCCGAAAGCGGCACGCCAATCCCCTTCGGCCCCTTCCTCGCCCT
CGCCGGCTGGATCGCCCTGCTCTGGGGCGAGCGGATCACCGGCAGCTACCTGCAGTTCGCCGGTTTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	57.664	94.81	0.547
pilD	Vibrio campbellii strain DS40M4	53.846	94.464	0.509
pilD	Acinetobacter baumannii D1279779	50.37	93.426	0.471
pilD	Acinetobacter nosocomialis M2	50.37	93.426	0.471
pilD	Neisseria gonorrhoeae MS11	49.81	91.003	0.453