Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   UB18_RS00790 Genome accession   NZ_CP011828
Coordinates   153328..153840 (-) Length   170 a.a.
NCBI ID   WP_002299768.1    Uniprot ID   A0A132P5P8
Organism   Enterococcus faecium strain UW8175     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 145105..161571 153328..153840 within 0


Gene organization within MGE regions


Location: 145105..161571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UB18_RS14130 - 145105..146531 (+) 1427 Protein_150 IS3-like element ISEfa10 family transposase -
  UB18_RS00765 (UB18_00765) - 146779..148071 (-) 1293 WP_002288375.1 adenylosuccinate synthase -
  UB18_RS00770 (UB18_00770) dnaB 148852..150219 (-) 1368 WP_002288373.1 replicative DNA helicase -
  UB18_RS00775 (UB18_00775) rplI 150493..150945 (-) 453 WP_002288372.1 50S ribosomal protein L9 -
  UB18_RS00780 (UB18_00780) - 150951..152923 (-) 1973 Protein_154 DHH family phosphoesterase -
  UB18_RS00785 (UB18_00785) rpsR 153066..153302 (-) 237 WP_002288370.1 30S ribosomal protein S18 -
  UB18_RS00790 (UB18_00790) ssb 153328..153840 (-) 513 WP_002299768.1 single-stranded DNA-binding protein Machinery gene
  UB18_RS00795 (UB18_00795) rpsF 153890..154189 (-) 300 WP_002288366.1 30S ribosomal protein S6 -
  UB18_RS00800 (UB18_00800) gyrA 154425..156896 (-) 2472 WP_002288365.1 DNA gyrase subunit A -
  UB18_RS00805 (UB18_00805) gyrB 156916..158862 (-) 1947 WP_002288364.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  UB18_RS00810 (UB18_00810) recF 158859..159983 (-) 1125 WP_002288363.1 DNA replication/repair protein RecF -
  UB18_RS00815 (UB18_00815) yaaA 159970..160212 (-) 243 WP_002295251.1 S4 domain-containing protein YaaA -
  UB18_RS00820 (UB18_00820) dnaN 160441..161571 (-) 1131 WP_002288361.1 DNA polymerase III subunit beta -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18437.96 Da        Isoelectric Point: 4.6742

>NTDB_id=148857 UB18_RS00790 WP_002299768.1 153328..153840(-) (ssb) [Enterococcus faecium strain UW8175]
MINNVVLVGRLTKDPDLRYTASGTAVATFTLAVNRNFTNQSGNREADFINCVIWRKSAETLANYARKGTLVGVTGRIQTR
SYDNQQGQRVYVTEVVADNFQLLESRSASENRQQSGGFQSSGQSAGGFGGNNNSNQTSQSSNGMPDFDRDTSDPFGSSST
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=148857 UB18_RS00790 WP_002299768.1 153328..153840(-) (ssb) [Enterococcus faecium strain UW8175]
TTGATTAATAATGTTGTATTAGTTGGACGTCTGACGAAAGATCCAGATTTGCGTTACACAGCAAGTGGTACGGCAGTCGC
AACATTTACTTTGGCTGTGAATCGTAATTTTACAAACCAAAGCGGCAATCGCGAGGCTGATTTTATCAACTGTGTGATTT
GGCGCAAATCAGCAGAAACTTTAGCAAACTATGCTCGTAAAGGAACACTTGTAGGTGTTACTGGACGTATCCAAACTCGT
TCTTATGATAATCAGCAAGGACAACGTGTATACGTGACAGAAGTAGTAGCTGACAACTTCCAATTGCTGGAAAGTCGTTC
TGCATCTGAAAATCGCCAACAAAGCGGCGGATTCCAAAGTTCTGGTCAATCAGCTGGCGGATTTGGCGGAAACAATAACT
CTAATCAAACATCTCAATCATCCAACGGTATGCCTGATTTCGACCGTGATACTTCTGACCCATTCGGCTCAAGTTCAACG
ATCGACATTTCAGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A132P5P8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.887

100

0.624
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.983

100

0.6
  ssbB Bacillus subtilis subsp. subtilis str. 168

63.208

62.353

0.394

Multiple sequence alignment