Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   Ccar_RS20630 Genome accession   NZ_CP011803
Coordinates   4596517..4596963 (-) Length   148 a.a.
NCBI ID   WP_007063409.1    Uniprot ID   A0AAU0NU69
Organism   Clostridium carboxidivorans P7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4591517..4601963
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Ccar_RS20605 (Ccar_20610) rplI 4592155..4592598 (-) 444 WP_048030379.1 50S ribosomal protein L9 -
  Ccar_RS20610 (Ccar_20615) - 4592598..4594583 (-) 1986 WP_007063413.1 DHH family phosphoesterase -
  Ccar_RS20615 (Ccar_20620) - 4594599..4595582 (-) 984 WP_007063412.1 YybS family protein -
  Ccar_RS20620 (Ccar_20625) - 4595594..4595911 (-) 318 WP_007063411.1 MazG-like family protein -
  Ccar_RS20625 (Ccar_20630) rpsR 4596241..4596498 (-) 258 WP_007063410.1 30S ribosomal protein S18 -
  Ccar_RS20630 (Ccar_20635) ssbA 4596517..4596963 (-) 447 WP_007063409.1 single-stranded DNA-binding protein Machinery gene
  Ccar_RS20635 (Ccar_20640) rpsF 4596975..4597262 (-) 288 WP_007063408.1 30S ribosomal protein S6 -
  Ccar_RS20640 (Ccar_20645) - 4597357..4597560 (-) 204 WP_007063407.1 DUF951 domain-containing protein -
  Ccar_RS20645 (Ccar_20650) - 4597565..4598437 (-) 873 WP_007063406.1 mechanosensitive ion channel family protein -
  Ccar_RS20650 (Ccar_20655) - 4598453..4598704 (-) 252 WP_007063405.1 DUF3343 domain-containing protein -
  Ccar_RS20655 (Ccar_20660) ytvI 4599070..4600125 (+) 1056 WP_007064801.1 sporulation integral membrane protein YtvI -
  Ccar_RS20660 (Ccar_20665) yyaC 4600239..4600844 (+) 606 WP_007063403.1 spore protease YyaC -
  Ccar_RS20665 (Ccar_20670) - 4600868..4601122 (-) 255 WP_007063402.1 YkuS family protein -
  Ccar_RS20670 (Ccar_20675) - 4601181..4601681 (-) 501 WP_007063401.1 DUF4446 family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16270.13 Da        Isoelectric Point: 4.6708

>NTDB_id=148811 Ccar_RS20630 WP_007063409.1 4596517..4596963(-) (ssbA) [Clostridium carboxidivorans P7]
MNKVVLIGRLTKDPELKFTPGNGTAVATFTLAVDRKFSRDGQKEADFIPIVVWGKQAESTANYMSKGKLMGVCGRIQTRT
YDAKDGTRRYVTEVVADEVQFLEWGSGNRSAAPSFNEASSEEFGNTQGFNEKAYGEDITPVDDGDIPF

Nucleotide


Download         Length: 447 bp        

>NTDB_id=148811 Ccar_RS20630 WP_007063409.1 4596517..4596963(-) (ssbA) [Clostridium carboxidivorans P7]
ATGAACAAGGTTGTTTTAATTGGAAGATTAACCAAAGATCCTGAGTTAAAATTTACTCCAGGAAATGGTACAGCTGTTGC
CACCTTTACTTTAGCCGTTGATAGAAAATTTTCTAGAGATGGTCAAAAAGAAGCTGATTTTATCCCTATAGTAGTATGGG
GAAAACAAGCTGAATCTACAGCAAATTATATGAGCAAAGGTAAGCTCATGGGAGTTTGTGGTAGAATTCAAACTAGAACA
TATGATGCTAAAGACGGTACTAGAAGATATGTTACTGAAGTTGTTGCAGATGAAGTACAATTCCTTGAATGGGGAAGTGG
AAATAGATCAGCAGCACCATCATTTAACGAAGCTTCATCTGAAGAATTTGGAAATACTCAAGGCTTTAATGAAAAAGCCT
ATGGAGAGGATATCACGCCAGTAGATGATGGAGATATCCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

47.093

100

0.547
  ssb Latilactobacillus sakei subsp. sakei 23K

52.885

70.27

0.372
  ssbB Bacillus subtilis subsp. subtilis str. 168

53.398

69.595

0.372

Multiple sequence alignment