Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AB688_RS10100 Genome accession   NZ_CP011789
Coordinates   2218784..2221006 (+) Length   740 a.a.
NCBI ID   WP_063543820.1    Uniprot ID   -
Organism   Pseudomonas putida strain PC2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2213784..2226006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB688_RS10080 (AB688_10095) - 2215652..2216275 (+) 624 WP_063543814.1 glutathione S-transferase -
  AB688_RS10085 (AB688_10100) - 2216423..2217355 (+) 933 WP_063543816.1 ABC transporter ATP-binding protein -
  AB688_RS10090 (AB688_10105) - 2217352..2218131 (+) 780 WP_063543818.1 ABC transporter permease -
  AB688_RS26230 - 2218015..2218641 (-) 627 WP_151924181.1 DUF2062 domain-containing protein -
  AB688_RS10100 (AB688_10115) comA 2218784..2221006 (+) 2223 WP_063543820.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB688_RS10105 (AB688_10120) exbB 2221117..2221752 (+) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB688_RS10110 (AB688_10125) - 2221749..2222183 (+) 435 WP_054893058.1 ExbD/TolR family protein -
  AB688_RS10115 (AB688_10130) lpxK 2222183..2223178 (+) 996 WP_054893059.1 tetraacyldisaccharide 4'-kinase -
  AB688_RS10120 (AB688_10135) - 2223220..2223405 (+) 186 WP_054893060.1 Trm112 family protein -
  AB688_RS10125 (AB688_10140) kdsB 2223402..2224166 (+) 765 WP_054893061.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB688_RS10130 (AB688_10145) - 2224166..2224630 (+) 465 WP_063543821.1 low molecular weight protein-tyrosine-phosphatase -
  AB688_RS10135 (AB688_10150) murB 2224627..2225646 (+) 1020 WP_063543823.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80758.82 Da        Isoelectric Point: 11.0433

>NTDB_id=148675 AB688_RS10100 WP_063543820.1 2218784..2221006(+) (comA) [Pseudomonas putida strain PC2]
MRTGMSALALGLLSLGLLPALPSVGWLFLLFLSALMCLFTRVWPIGWFLLGLNWACWSAQQALDDRLIAELDGRTLWLEG
RVTGLATQSGRSVRFELDEAQSRRAKLPRRMQLSWFDGPMVRTGERWRLAVNLRRPQGLLNPHGPDREAMLLARRIGATG
TVRAGEMLAPASGGWRDRLRQRLLAVDAQGREVVLAALVLGDGSGLAREDWQALQATGTVHLMVISGQHIGLLAGLIYGL
VAGLARLGAWPGRLPWLPWACGLAMAAALAYGALAGFQVPVQRACLMLATVLVWRLRFRHLGAFFPLLLALVGVLLFEPL
ASLMPGFWLSFAAVAVLIYCFSARLGGWRPWQAWSRAQWVIAIGLLPAMLALGLPVSLSAPLVNLLAVPWISLAVLPLAL
LGTATLPLAGVGESLLWLAGGLIDLMFRALGLLAEWRPPWTPPPLSLWAWTLVCAGALLLLLPRGVPLRGLGAVMLLALW
APREQVPHAEVEVWQLDVGQGLAVLLRTRHHSLLYDAGPAMGTSDLGQSVVLPTLRRLGVNQLDLMLISHAHADHAGGAL
AVQRGLPVVRVLAGEARELPAVLDAQVCSSGERWEWDGVMFSLWHWPSGKNSNDRSCVLLVEAQGERLLLAGDMEAGAER
AWLESADAARIDWLQSPHHGSRSSSTEPFIRAIAPRGVMISRGRHNGFGHPHPQVIERYRRHGLAVHDTALQGALRLRLG
RHGEVEGLRAQRRFWREPPS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=148675 AB688_RS10100 WP_063543820.1 2218784..2221006(+) (comA) [Pseudomonas putida strain PC2]
ATGCGCACAGGGATGTCTGCGCTGGCGCTCGGGTTGTTGAGCCTGGGTCTCTTGCCTGCCTTGCCGTCGGTCGGATGGCT
GTTCCTTCTGTTCTTGTCGGCACTGATGTGCCTGTTCACTCGCGTCTGGCCGATAGGGTGGTTCCTGCTGGGGCTGAACT
GGGCCTGCTGGTCGGCGCAGCAGGCCCTTGATGATCGCCTGATCGCCGAGCTCGATGGGCGCACGCTGTGGCTGGAGGGC
AGGGTGACGGGGCTGGCGACGCAGTCCGGGCGCAGCGTGCGTTTCGAGCTGGACGAGGCACAGTCCCGGCGTGCGAAGTT
ACCCCGCCGGATGCAACTGAGCTGGTTCGACGGTCCCATGGTCCGGACTGGCGAGCGCTGGCGGCTCGCGGTCAACCTCA
GACGCCCTCAGGGGCTGCTCAATCCCCATGGTCCCGACCGCGAAGCGATGCTGCTGGCACGGCGCATTGGTGCCACAGGA
ACGGTCAGGGCCGGGGAGATGCTGGCCCCGGCGAGCGGGGGCTGGCGCGACAGGCTGCGCCAGCGCTTGCTGGCGGTGGA
CGCCCAAGGGCGGGAGGTGGTGCTGGCGGCGTTGGTGCTCGGTGACGGTTCTGGGCTGGCGCGGGAGGACTGGCAGGCCT
TGCAGGCGACCGGCACCGTGCACCTGATGGTGATTTCGGGGCAGCACATTGGCTTGCTGGCGGGGCTGATCTATGGGCTG
GTTGCCGGACTGGCCCGTCTGGGTGCCTGGCCAGGGAGGCTACCGTGGTTGCCCTGGGCGTGCGGCCTGGCGATGGCGGC
AGCCTTGGCCTATGGCGCCCTGGCTGGCTTTCAGGTGCCTGTGCAGCGTGCATGCCTGATGCTGGCCACTGTCTTGGTCT
GGCGTCTGCGCTTTCGTCATCTGGGGGCGTTCTTCCCCTTGTTGCTGGCTTTGGTCGGTGTATTGCTGTTCGAGCCCCTG
GCCAGCCTGATGCCGGGCTTCTGGCTGTCTTTCGCGGCGGTGGCAGTGCTGATCTACTGCTTCAGCGCGCGTCTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGAGTCGTGCTCAATGGGTGATCGCCATCGGTTTGCTGCCCGCGATGCTGGCGCTGGGTC
TGCCTGTCAGCCTCAGCGCGCCGTTGGTCAATCTCCTGGCAGTACCCTGGATCAGCCTGGCGGTGTTGCCATTGGCCCTG
CTCGGAACGGCGACGCTGCCGTTGGCAGGGGTGGGGGAATCGTTGCTGTGGCTGGCAGGTGGGTTGATCGACCTGATGTT
TCGCGCGCTCGGCCTGCTGGCCGAATGGCGTCCACCCTGGACGCCCCCGCCGCTTTCGCTGTGGGCGTGGACGCTGGTGT
GTGCGGGCGCGTTGCTGCTCTTGCTGCCACGCGGCGTGCCGCTGCGAGGACTGGGGGCGGTGATGCTGCTGGCGCTGTGG
GCGCCTCGCGAGCAGGTGCCGCACGCAGAGGTGGAAGTCTGGCAACTGGACGTGGGTCAAGGCCTGGCGGTGCTGTTGCG
CACGCGGCATCACAGCCTGCTCTACGATGCCGGGCCGGCGATGGGCACCAGTGACCTTGGGCAGAGCGTGGTGCTGCCGA
CCTTGCGCAGGCTGGGTGTCAACCAGCTCGATCTGATGCTGATCAGCCATGCACATGCCGACCACGCCGGCGGCGCTCTC
GCCGTGCAGCGCGGCCTGCCGGTGGTGCGGGTGCTGGCTGGCGAAGCACGGGAGTTGCCCGCAGTCTTGGACGCGCAGGT
GTGCAGCAGTGGTGAGCGCTGGGAGTGGGATGGCGTGATGTTCTCGCTGTGGCACTGGCCCAGTGGCAAGAACAGCAACG
ACCGCTCCTGTGTGCTGCTGGTCGAGGCCCAGGGTGAGCGCTTGCTGCTGGCTGGCGACATGGAGGCCGGTGCCGAGCGT
GCCTGGCTGGAGTCCGCCGATGCGGCGCGTATCGACTGGCTGCAGTCCCCGCATCATGGTAGCCGTAGTTCCTCCACCGA
GCCTTTCATCCGCGCCATCGCGCCGCGTGGCGTGATGATTTCCCGTGGGCGACACAATGGTTTCGGTCACCCGCACCCGC
AGGTGATCGAGCGCTATCGGCGGCATGGGCTGGCAGTGCATGACACGGCACTGCAAGGGGCGCTGCGCCTGCGACTGGGC
AGGCACGGAGAGGTCGAGGGATTGCGTGCGCAGCGGCGCTTCTGGCGTGAGCCGCCTTCCTAG

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(20-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-679)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.223

97.162

0.585
  comA Ralstonia pseudosolanacearum GMI1000

35.026

100

0.364

Multiple sequence alignment