Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AB688_RS10105 Genome accession   NZ_CP011789
Coordinates   2221117..2221752 (+) Length   211 a.a.
NCBI ID   WP_054893125.1    Uniprot ID   A0AAD0PE55
Organism   Pseudomonas putida strain PC2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2216117..2226752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB688_RS10085 (AB688_10100) - 2216423..2217355 (+) 933 WP_063543816.1 ABC transporter ATP-binding protein -
  AB688_RS10090 (AB688_10105) - 2217352..2218131 (+) 780 WP_063543818.1 ABC transporter permease -
  AB688_RS26230 - 2218015..2218641 (-) 627 WP_151924181.1 DUF2062 domain-containing protein -
  AB688_RS10100 (AB688_10115) comA 2218784..2221006 (+) 2223 WP_063543820.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AB688_RS10105 (AB688_10120) exbB 2221117..2221752 (+) 636 WP_054893125.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AB688_RS10110 (AB688_10125) - 2221749..2222183 (+) 435 WP_054893058.1 ExbD/TolR family protein -
  AB688_RS10115 (AB688_10130) lpxK 2222183..2223178 (+) 996 WP_054893059.1 tetraacyldisaccharide 4'-kinase -
  AB688_RS10120 (AB688_10135) - 2223220..2223405 (+) 186 WP_054893060.1 Trm112 family protein -
  AB688_RS10125 (AB688_10140) kdsB 2223402..2224166 (+) 765 WP_054893061.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AB688_RS10130 (AB688_10145) - 2224166..2224630 (+) 465 WP_063543821.1 low molecular weight protein-tyrosine-phosphatase -
  AB688_RS10135 (AB688_10150) murB 2224627..2225646 (+) 1020 WP_063543823.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22831.12 Da        Isoelectric Point: 7.3616

>NTDB_id=148676 AB688_RS10105 WP_054893125.1 2221117..2221752(+) (exbB) [Pseudomonas putida strain PC2]
MWELVKSGGWMMLPIILSSVAAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVLQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=148676 AB688_RS10105 WP_054893125.1 2221117..2221752(+) (exbB) [Pseudomonas putida strain PC2]
GTGTGGGAATTGGTCAAGTCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGCTCCGTCGCAGCCATGGCAATTGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGTCGCGTCACCCCGCCGCACCTGCTGGGCCAGGTATGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCTTTGCGCGCCGACTCCCCCTTGGGCGAGATTCTCGCCGCGGGCCTGGCAAAC
TCTCGCCATGGCCGCGAGATCATGAAGGAATGCATCGAGGAGGCCGCCTCCCGGGTCATCCACGAGCTCGAGCGCTACAT
CAGCACGCTGGGCACCATCGCTGCAATGGCGCCGTTGCTCGGTCTGCTTGGCACCGTACTTGGCATGATCGACATCTTCA
GTGCGTTCATGGGCTCGCAGATGACTGCCAACGCCGCGGTGCTCGCCGGGGGTATTTCCAAGGCGCTGGTGACCACCGCA
GCGGGCCTGATGGTTGGTATCCCCGCCGTATTCTTCCACCGTTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTTGGCAT
GGAGCAGGAGGCGATCAAGCTGGTCGAGGTGCTGCAGGGCGATCGCGAGGTCGAGGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825

Multiple sequence alignment