Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AYM92_RS07405 Genome accession   NZ_CP014542
Coordinates   1386329..1386970 (-) Length   213 a.a.
NCBI ID   WP_002983671.1    Uniprot ID   A0A0H2UW05
Organism   Streptococcus pyogenes strain STAB14018     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381329..1391970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM92_RS07380 (AYM92_07130) comFA/cflA 1381415..1382740 (-) 1326 WP_047235421.1 DEAD/DEAH box helicase Machinery gene
  AYM92_RS07385 (AYM92_07135) - 1382796..1383428 (+) 633 WP_002988970.1 YigZ family protein -
  AYM92_RS07390 (AYM92_07140) cysK 1383556..1384497 (+) 942 WP_011528853.1 cysteine synthase A -
  AYM92_RS07395 (AYM92_07145) - 1384515..1384892 (-) 378 WP_002983674.1 S1 RNA-binding domain-containing protein -
  AYM92_RS07400 (AYM92_07150) - 1384892..1386292 (-) 1401 WP_002983672.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  AYM92_RS07405 (AYM92_07155) vraR 1386329..1386970 (-) 642 WP_002983671.1 response regulator transcription factor Regulator
  AYM92_RS07410 (AYM92_07160) - 1386963..1387967 (-) 1005 WP_002983669.1 sensor histidine kinase -
  AYM92_RS07415 (AYM92_07165) liaF 1387964..1388656 (-) 693 WP_011054833.1 cell wall-active antibiotics response protein LiaF -
  AYM92_RS07420 (AYM92_07170) pknB 1388779..1390677 (-) 1899 WP_063812253.1 Stk1 family PASTA domain-containing Ser/Thr kinase Regulator
  AYM92_RS07425 (AYM92_07175) - 1390674..1391414 (-) 741 WP_002983660.1 Stp1/IreP family PP2C-type Ser/Thr phosphatase -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23751.43 Da        Isoelectric Point: 5.1641

>NTDB_id=148642 AYM92_RS07405 WP_002983671.1 1386329..1386970(-) (vraR) [Streptococcus pyogenes strain STAB14018]
MSKIKVILVDDHEMVRMGLKSFLNLQADIDVVGEASNGREGVDLALALKPDVLVMDLVMPELGGVEATLEVLKKWKEAKV
LVLTSYLDNEKIYPVIDAGAKGYMLKTSSAAEILNAIRKVSKGELAIETEVDKKIKAHDQHPDLHEELTAREYDILHLLA
KGYDNQTIADELFISLKTVKTHVSNILAKLEVDDRTQAVVYAFRHHLVPQDDN

Nucleotide


Download         Length: 642 bp        

>NTDB_id=148642 AYM92_RS07405 WP_002983671.1 1386329..1386970(-) (vraR) [Streptococcus pyogenes strain STAB14018]
ATGAGTAAGATAAAAGTGATATTGGTCGATGATCATGAAATGGTCCGCATGGGACTCAAGAGTTTTTTGAATTTACAAGC
TGATATTGATGTCGTTGGTGAAGCCTCTAATGGACGTGAAGGGGTTGATTTGGCATTGGCCTTGAAGCCAGATGTTTTGG
TTATGGATCTAGTGATGCCAGAGTTAGGCGGTGTTGAGGCAACTTTAGAAGTCCTAAAAAAATGGAAAGAGGCTAAGGTA
CTTGTGTTAACTTCCTATCTAGATAATGAAAAGATATACCCTGTCATTGATGCTGGTGCTAAAGGTTACATGTTAAAGAC
TTCTAGTGCAGCCGAAATTCTAAATGCTATTCGGAAAGTTTCAAAAGGTGAATTGGCCATTGAAACAGAGGTGGACAAAA
AAATTAAAGCGCATGACCAACACCCTGATTTGCATGAAGAGCTAACCGCGCGCGAGTATGATATTTTACATCTTTTAGCT
AAAGGGTATGATAATCAAACTATAGCGGATGAACTTTTCATCTCCTTGAAAACCGTTAAAACGCATGTATCTAATATTCT
TGCTAAGCTAGAAGTTGATGACCGAACTCAAGCGGTTGTCTATGCTTTTCGACACCATTTAGTCCCCCAAGACGATAATT
AA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(148-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2UW05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.913

96.714

0.512
  degU Bacillus subtilis subsp. subtilis str. 168

36.283

100

0.385

Multiple sequence alignment