Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   L63ED372_RS06210 Genome accession   NZ_CP011774
Coordinates   1292618..1293406 (-) Length   262 a.a.
NCBI ID   WP_156343565.1    Uniprot ID   -
Organism   Limnohabitans sp. 63ED37-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1287618..1298406
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L63ED372_RS06190 (L63ED372_01243) zapE 1288726..1289823 (+) 1098 WP_062404386.1 cell division protein ZapE -
  L63ED372_RS16495 (L63ED372_01244) - 1289820..1290275 (+) 456 WP_197275331.1 hypothetical protein -
  L63ED372_RS06200 (L63ED372_01245) - 1290314..1290514 (+) 201 WP_062407736.1 DUF465 domain-containing protein -
  L63ED372_RS06205 (L63ED372_01246) - 1290610..1292649 (+) 2040 WP_231624602.1 ATP-dependent DNA helicase -
  L63ED372_RS06210 (L63ED372_01247) comL 1292618..1293406 (-) 789 WP_156343565.1 outer membrane protein assembly factor BamD Machinery gene
  L63ED372_RS06215 (L63ED372_01248) - 1293478..1294470 (+) 993 WP_062404392.1 RluA family pseudouridine synthase -
  L63ED372_RS06220 (L63ED372_01249) scpB 1294600..1295259 (+) 660 WP_231624580.1 SMC-Scp complex subunit ScpB -
  L63ED372_RS06225 (L63ED372_01250) - 1295256..1296470 (+) 1215 WP_062404395.1 pseudouridine synthase -
  L63ED372_RS06230 (L63ED372_01251) ndk 1296633..1297058 (+) 426 WP_062404397.1 nucleoside-diphosphate kinase -
  L63ED372_RS06235 (L63ED372_01252) rlmN 1297100..1298266 (+) 1167 WP_062404400.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -

Sequence

Protein


Download         Length: 262 a.a.        Molecular weight: 28873.71 Da        Isoelectric Point: 9.0277

>NTDB_id=148601 L63ED372_RS06210 WP_156343565.1 1292618..1293406(-) (comL) [Limnohabitans sp. 63ED37-2]
MVPVGLVLATGLFLSGCANTTKDVTAGWTPEKIYSEARDEAKAGAWDKAIGYYEKLEGRAAGTALAQQAQIDKAFAQYKT
GDKIQAVATLDRFIRLHPTSPAIDYALYLKGLVNFNDNLGLFSFITRQDLSERDQKAAKDSYEAFRELSTRFPESKYSAD
ARQRMTHIVNSLAAYEVHVARYYASRGAHVAAINRAQQAIADYQGVPALEEALAILISSYKAMGMTALSNDARRVLETNF
PKSAFLLTDGAEVKRSGGWRLW

Nucleotide


Download         Length: 789 bp        

>NTDB_id=148601 L63ED372_RS06210 WP_156343565.1 1292618..1293406(-) (comL) [Limnohabitans sp. 63ED37-2]
ATGGTTCCAGTCGGCCTGGTTTTGGCCACGGGACTCTTTCTGAGCGGCTGCGCGAACACCACCAAGGACGTCACAGCGGG
TTGGACCCCTGAAAAAATCTACAGCGAAGCCCGAGATGAGGCCAAGGCTGGTGCTTGGGACAAGGCCATTGGCTACTACG
AAAAGCTCGAAGGCCGCGCAGCCGGCACCGCACTGGCCCAGCAAGCCCAGATTGACAAGGCCTTTGCCCAGTACAAAACC
GGCGACAAAATCCAGGCCGTGGCCACCCTGGACCGCTTCATCCGCCTGCACCCCACCAGCCCGGCCATTGACTACGCGCT
CTACCTCAAAGGTCTGGTCAACTTCAACGACAACCTCGGGCTGTTTTCCTTCATCACGCGGCAAGACCTGTCTGAGCGCG
ACCAAAAGGCCGCCAAAGACTCTTATGAAGCGTTTCGCGAGTTGAGCACCCGCTTTCCAGAATCCAAATACAGCGCCGAT
GCCCGTCAGCGCATGACACACATCGTCAACTCACTGGCCGCTTATGAGGTGCATGTGGCCCGCTACTACGCCAGCCGCGG
TGCCCATGTGGCCGCCATCAACCGGGCTCAGCAAGCCATTGCCGATTACCAGGGGGTGCCTGCCCTTGAAGAAGCGCTGG
CGATTTTGATCAGTTCCTACAAGGCCATGGGCATGACGGCGCTGAGCAACGATGCCCGTCGCGTGCTGGAGACCAACTTC
CCCAAGTCGGCCTTTTTGCTCACCGATGGCGCCGAGGTCAAGCGCTCGGGTGGCTGGCGTCTGTGGTGA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(29-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

47.037

100

0.485
  comL Neisseria gonorrhoeae MS11

46.067

100

0.469

Multiple sequence alignment