Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AVR72_RS19310 Genome accession   NZ_CP014495
Coordinates   3805104..3805736 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain SaT040     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3800104..3810736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVR72_RS19280 (AVR72_19275) yheS 3800273..3802186 (+) 1914 WP_000634830.1 ABC transporter ATP-binding protein -
  AVR72_RS19285 (AVR72_19280) yheT 3802186..3803208 (+) 1023 WP_000057364.1 hydrolase -
  AVR72_RS19290 (AVR72_19285) yheU 3803202..3803420 (+) 219 WP_000907085.1 YheU family protein -
  AVR72_RS19295 (AVR72_19290) prkB 3803474..3804343 (+) 870 WP_001274684.1 phosphoribulokinase -
  AVR72_RS19300 (AVR72_19295) yhfA 3804398..3804802 (-) 405 WP_001148908.1 OsmC family protein -
  AVR72_RS19310 (AVR72_19305) crp 3805104..3805736 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AVR72_RS19315 (AVR72_19310) yhfK 3805787..3807877 (+) 2091 WP_001296470.1 YccS/YhfK family putative transporter -
  AVR72_RS19320 (AVR72_19315) argD 3807944..3809164 (-) 1221 WP_000963794.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AVR72_RS19325 (AVR72_19320) pabA 3809250..3809813 (-) 564 WP_000601853.1 aminodeoxychorismate synthase component 2 -
  AVR72_RS19330 (AVR72_19325) fic 3809845..3810447 (-) 603 WP_001280613.1 putative adenosine monophosphate-protein transferase Fic -
  AVR72_RS19335 (AVR72_19330) yhfG 3810437..3810604 (-) 168 WP_000736858.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=147992 AVR72_RS19310 WP_000242755.1 3805104..3805736(+) (crp) [Escherichia coli strain SaT040]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=147992 AVR72_RS19310 WP_000242755.1 3805104..3805736(+) (crp) [Escherichia coli strain SaT040]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCGGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467