Detailed information NTG0146930

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PGR6_RS07230
• Genome accession: NZ_CP011567
• Coordinates: 1658696..1660930 (+)
• Length: 744 a.a.
• NCBI ID: WP_064616572.1
• Uniprot ID: -
• Organism: Pseudomonas sp. GR 6-02
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1653696..1665930

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGR6_RS07205 (PGR6_14550)	-	1654798..1655457 (+)	660	WP_064616568.1	transglutaminase family protein	-
PGR6_RS07210 (PGR6_14560)	-	1655501..1656124 (+)	624	WP_018926240.1	glutathione S-transferase	-
PGR6_RS07215 (PGR6_14570)	-	1656258..1657190 (+)	933	WP_064616570.1	ABC transporter ATP-binding protein	-
PGR6_RS07220 (PGR6_14580)	-	1657187..1657966 (+)	780	WP_018926238.1	ABC transporter permease	-
PGR6_RS07225 (PGR6_14590)	-	1658038..1658559 (-)	522	WP_018926237.1	DUF2062 domain-containing protein	-
PGR6_RS07230 (PGR6_14600)	comA	1658696..1660930 (+)	2235	WP_064616572.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PGR6_RS07235 (PGR6_14610)	exbB	1661028..1661663 (+)	636	WP_007941964.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PGR6_RS07240 (PGR6_14620)	-	1661660..1662088 (+)	429	WP_018926235.1	biopolymer transporter ExbD	-
PGR6_RS07245 (PGR6_14630)	lpxK	1662088..1663098 (+)	1011	WP_064616574.1	tetraacyldisaccharide 4'-kinase	-
PGR6_RS07250 (PGR6_14640)	-	1663124..1663309 (+)	186	WP_003179363.1	Trm112 family protein	-
PGR6_RS07255 (PGR6_14650)	kdsB	1663306..1664070 (+)	765	WP_018926233.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PGR6_RS07260 (PGR6_14660)	-	1664070..1664534 (+)	465	WP_018926232.1	low molecular weight protein-tyrosine-phosphatase	-
PGR6_RS07265 (PGR6_14670)	murB	1664531..1665550 (+)	1020	WP_064616576.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 744 a.a.
• Molecular weight: 81637.88 Da
• Isoelectric Point: 9.9613

>NTDB_id=146930 PGR6_RS07230 WP_064616572.1 1658696..1660930(+) (comA) [Pseudomonas sp. GR 6-02]
MRTGMMALALGLLALRFLPALPPAGLWLLLPVVGLMLLPFRTFPLAFWLFGFSWACANAQWALDDRLALKLDGETRWVEG
RVTGLPQQAEGVVRFELTDSQSRRTQLPRHLRLAWYGGPPVNSGERWRLAVKLKRPAGLLNPHGFDYDAWLLAQRIGATG
TVKDGQRLGQAQWAWRDGIRQRLQAVDAHGRTGALTALVLGDGAGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
IAGLARYGLWPRRLPWLPWACGLAFAAALGYGLLAGFEVPVRRACLMIGLLLLWRLRFRHLGAWWPLLLALDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLCPLLLVLGLPISLSGPLANLLAVPWISLLVLPPAL
LGTLLLAVPYVGEGLLWLAGGLIDLLFKGLALVAGQLPAWVPVAVPLWVWAFGALGAFLLLLPPGVPLRPLGWPMLLLLV
FAPRHTLPEGVAEIWQLDVGQGLAILVRTRHHTLLYDAGPRFGDIDLGERVVLPTLRKLGVNGLDLMLISHADADHAGGA
RAIASGVPVTRVLSGDPLALPDELHAEGCESGQQWTWDDVRFQLWQWSSASDSNQKSCVLQIEANGERLLLTGDIDTAAE
RVLLDSPLAVPTDWLQAPHHGSRSSSSMALLSALLPKAVLISRGNGNSFGHPHPTVVARYQKRGMAIYDSAEQGAIRLQL
GRFKPPWTMLQERRFWRDPPVLRQ

Nucleotide

• Length: 2235 bp

>NTDB_id=146930 PGR6_RS07230 WP_064616572.1 1658696..1660930(+) (comA) [Pseudomonas sp. GR 6-02]
ATGCGCACAGGGATGATGGCGCTGGCGTTGGGTCTGCTGGCCCTGCGTTTTTTGCCGGCACTGCCGCCGGCAGGGTTGTG
GCTGTTGTTGCCGGTAGTGGGTTTGATGTTGTTGCCGTTTCGAACCTTTCCACTGGCATTTTGGTTGTTTGGCTTCAGTT
GGGCGTGTGCGAATGCGCAGTGGGCGCTGGATGATCGCCTGGCGCTGAAGCTCGATGGCGAGACTCGCTGGGTCGAAGGC
CGGGTTACCGGGTTGCCGCAGCAGGCCGAGGGTGTAGTGCGTTTCGAACTGACAGACAGTCAGTCGCGTCGCACCCAACT
GCCCCGGCACCTGCGTCTGGCCTGGTATGGCGGGCCGCCCGTCAACAGTGGCGAGCGGTGGCGGCTGGCAGTCAAATTGA
AGCGTCCTGCCGGGCTGCTCAACCCTCATGGTTTTGATTACGACGCCTGGTTGCTGGCCCAACGTATTGGCGCCACTGGG
ACCGTCAAGGACGGTCAGCGACTGGGGCAAGCGCAGTGGGCCTGGCGCGACGGCATTCGTCAGCGTTTGCAGGCCGTGGA
TGCGCACGGGCGAACGGGAGCGCTGACGGCGTTGGTGCTGGGGGACGGCGCCGGGCTGAGCCGTGAGGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCATCTGTTGGTGATTTCCGGGCAACACATTGGTTTGCTGGCGGGGCTGGTGTATCTGCTG
ATCGCCGGGCTGGCGCGCTATGGCTTATGGCCTAGGCGCTTGCCGTGGCTGCCATGGGCGTGTGGGCTGGCGTTCGCGGC
GGCGCTCGGTTATGGGCTGCTGGCCGGTTTCGAGGTGCCGGTGCGTCGGGCCTGCCTGATGATTGGTCTGCTGTTGTTGT
GGCGGCTACGGTTTCGTCACCTCGGCGCCTGGTGGCCGCTGTTGCTGGCGCTTGACGGTGTTTTGCTGCTGGACCCGCTG
GCAAGCCTGCAACCGGGTTTCTGGTTGTCCTTTGCGGCAGTAGCGGTGCTGATTTTCACCTTTGGCGGGCGATTGGGCCC
GTGGCGTTGGTGGCAAACCTGGACCCGTGCCCAATGGCTGATCGCAATCGGTCTGTGCCCGCTGCTGTTGGTACTGGGGT
TGCCGATCAGTCTCAGCGGGCCGCTGGCCAATCTTCTGGCGGTGCCCTGGATCAGCCTGCTGGTCTTGCCGCCGGCCTTG
CTCGGAACGCTGCTGTTGGCCGTTCCCTATGTGGGCGAGGGGTTACTGTGGTTGGCTGGCGGTCTGATCGACCTTTTGTT
CAAGGGGCTGGCGTTGGTGGCCGGGCAATTGCCCGCGTGGGTGCCGGTGGCGGTTCCGTTGTGGGTTTGGGCGTTCGGCG
CACTGGGCGCATTTCTGCTGTTACTGCCACCGGGCGTGCCGTTGCGCCCGCTGGGCTGGCCGATGTTGCTGTTGCTGGTT
TTTGCGCCCCGGCACACGCTGCCTGAAGGCGTCGCCGAAATCTGGCAGCTGGATGTCGGCCAGGGGTTGGCCATTCTGGT
GCGCACCCGCCATCACACTCTGCTGTATGACGCCGGGCCACGGTTCGGCGATATCGACTTGGGTGAGCGGGTGGTGTTGC
CAACATTGCGCAAACTGGGGGTGAATGGACTTGATTTGATGCTGATCAGCCATGCCGACGCCGATCACGCCGGCGGTGCG
CGAGCGATTGCCAGCGGTGTGCCGGTGACTCGGGTACTGAGTGGCGACCCACTGGCCCTGCCGGACGAGCTACATGCCGA
GGGCTGCGAGAGCGGTCAACAGTGGACCTGGGACGACGTGCGGTTCCAGCTCTGGCAGTGGTCGTCGGCCAGCGACAGCA
ATCAGAAATCCTGCGTGCTGCAGATCGAAGCCAACGGCGAGCGGTTGCTGCTGACCGGCGATATCGATACCGCGGCCGAG
CGGGTGCTGCTCGACAGTCCACTGGCGGTGCCGACGGACTGGTTGCAGGCCCCGCACCACGGCAGTCGCAGCTCATCTTC
GATGGCGTTGCTCAGCGCTCTGCTGCCTAAAGCGGTGCTGATTTCCCGTGGCAACGGTAATTCTTTCGGTCATCCCCATC
CCACAGTCGTGGCGCGTTATCAAAAGCGTGGCATGGCGATCTACGACAGCGCCGAGCAGGGTGCCATTCGTCTACAACTG
GGGCGCTTCAAACCACCTTGGACGATGCTTCAGGAACGGCGTTTCTGGCGCGATCCGCCAGTATTGCGCCAGTAG

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-680)

• Domain of unknown function (DUF4131) (DUF4131) (22-167)

• Competence protein (Competence) (198-463)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	63.839	96.64	0.617
comA	Ralstonia pseudosolanacearum GMI1000	33.453	100	0.375