Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   ABA10_RS18785 Genome accession   NZ_CP011534
Coordinates   3671142..3671261 (+) Length   39 a.a.
NCBI ID   WP_041334633.1    Uniprot ID   A0AA96UN30
Organism   Bacillus subtilis strain UD1022     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3666142..3676261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS18760 (ABA10_18760) albG 3666308..3667009 (+) 702 WP_015384931.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  ABA10_RS18765 (ABA10_18765) ywhL 3667015..3668388 (-) 1374 WP_047183346.1 YncE family protein -
  ABA10_RS18770 (ABA10_18770) ywhK 3668428..3669783 (-) 1356 WP_047183347.1 YncE family protein -
  ABA10_RS22225 (ABA10_18775) - 3669780..3670010 (-) 231 WP_047183348.1 hypothetical protein -
  ABA10_RS18780 (ABA10_18780) rapF 3670013..3671158 (+) 1146 WP_047183349.1 response regulator aspartate phosphatase RapF Regulator
  ABA10_RS18785 (ABA10_18785) phrF 3671142..3671261 (+) 120 WP_041334633.1 phosphatase RapF inhibitor PhrF Regulator
  ABA10_RS18790 (ABA10_18790) - 3671359..3671823 (+) 465 WP_047183350.1 YbaK/EbsC family protein -
  ABA10_RS18795 (ABA10_18795) speB 3671860..3672732 (-) 873 WP_003227545.1 agmatinase -
  ABA10_RS18800 (ABA10_18800) speE 3672793..3673623 (-) 831 WP_003227543.1 spermidine synthase -
  ABA10_RS18805 (ABA10_18805) pbpG 3673825..3675900 (+) 2076 WP_047183351.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4215.16 Da        Isoelectric Point: 9.5675

>NTDB_id=146778 ABA10_RS18785 WP_041334633.1 3671142..3671261(+) (phrF) [Bacillus subtilis strain UD1022]
MKLKSKLLLSCLALCTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=146778 ABA10_RS18785 WP_041334633.1 3671142..3671261(+) (phrF) [Bacillus subtilis strain UD1022]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTATGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

97.436

100

0.974
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487

Multiple sequence alignment