Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   ABA10_RS17720 Genome accession   NZ_CP011534
Coordinates   3451629..3452318 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain UD1022     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3446629..3457318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS17685 (ABA10_17685) flgN 3446809..3447291 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ABA10_RS17690 (ABA10_17690) flgM 3447307..3447573 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABA10_RS17695 (ABA10_17695) yvyF 3447654..3448073 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABA10_RS17700 (ABA10_17700) comFC 3448147..3448869 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  ABA10_RS17705 (ABA10_17705) comFB 3448833..3449129 (-) 297 WP_015483764.1 late competence protein ComFB -
  ABA10_RS17710 (ABA10_17710) comFA 3449189..3450580 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  ABA10_RS17715 (ABA10_17715) fakBA 3450686..3451531 (-) 846 WP_047183274.1 DegV family protein -
  ABA10_RS17720 (ABA10_17720) degU 3451629..3452318 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABA10_RS17725 (ABA10_17725) degS 3452401..3453558 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ABA10_RS17730 (ABA10_17730) yvyE 3453775..3454428 (+) 654 WP_003227979.1 YigZ family protein -
  ABA10_RS17735 (ABA10_17735) tagV 3454428..3455603 (+) 1176 WP_047183275.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  ABA10_RS17740 (ABA10_17740) tagO 3455676..3456752 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=146772 ABA10_RS17720 WP_003219701.1 3451629..3452318(-) (degU) [Bacillus subtilis strain UD1022]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=146772 ABA10_RS17720 WP_003219701.1 3451629..3452318(-) (degU) [Bacillus subtilis strain UD1022]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment