Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ABA10_RS17710 Genome accession   NZ_CP011534
Coordinates   3449189..3450580 (-) Length   463 a.a.
NCBI ID   WP_047183273.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3444189..3455580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS17675 (ABA10_17675) flgL 3444360..3445256 (-) 897 WP_047183271.1 flagellar hook-associated protein FlgL -
  ABA10_RS17680 (ABA10_17680) flgK 3445267..3446790 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  ABA10_RS17685 (ABA10_17685) flgN 3446809..3447291 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ABA10_RS17690 (ABA10_17690) flgM 3447307..3447573 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABA10_RS17695 (ABA10_17695) yvyF 3447654..3448073 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABA10_RS17700 (ABA10_17700) comFC 3448147..3448869 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  ABA10_RS17705 (ABA10_17705) comFB 3448833..3449129 (-) 297 WP_015483764.1 late competence protein ComFB -
  ABA10_RS17710 (ABA10_17710) comFA 3449189..3450580 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  ABA10_RS17715 (ABA10_17715) fakBA 3450686..3451531 (-) 846 WP_047183274.1 DegV family protein -
  ABA10_RS17720 (ABA10_17720) degU 3451629..3452318 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABA10_RS17725 (ABA10_17725) degS 3452401..3453558 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  ABA10_RS17730 (ABA10_17730) yvyE 3453775..3454428 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52499.52 Da        Isoelectric Point: 9.8740

>NTDB_id=146771 ABA10_RS17710 WP_047183273.1 3449189..3450580(-) (comFA) [Bacillus subtilis strain UD1022]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRGYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=146771 ABA10_RS17710 WP_047183273.1 3449189..3450580(-) (comFA) [Bacillus subtilis strain UD1022]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGGAGCCGTCATTTGCTCAGGAC
TGAACTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGGGATATAGATGTAATAGGTGCGGCCAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGAAGTCAATTAAACTGACATGGGATGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTATTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATT
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAAAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(326-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.704

100

0.987

Multiple sequence alignment