Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   ABA10_RS17700 Genome accession   NZ_CP011534
Coordinates   3448147..3448869 (-) Length   240 a.a.
NCBI ID   WP_047183272.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3443147..3453869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS17665 (ABA10_17665) fliW 3443286..3443717 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  ABA10_RS17670 (ABA10_17670) yviE 3443738..3444313 (-) 576 WP_015384781.1 DUF6470 family protein -
  ABA10_RS17675 (ABA10_17675) flgL 3444360..3445256 (-) 897 WP_047183271.1 flagellar hook-associated protein FlgL -
  ABA10_RS17680 (ABA10_17680) flgK 3445267..3446790 (-) 1524 WP_015384782.1 flagellar hook-associated protein FlgK -
  ABA10_RS17685 (ABA10_17685) flgN 3446809..3447291 (-) 483 WP_014481048.1 flagellar protein FlgN -
  ABA10_RS17690 (ABA10_17690) flgM 3447307..3447573 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  ABA10_RS17695 (ABA10_17695) yvyF 3447654..3448073 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  ABA10_RS17700 (ABA10_17700) comFC 3448147..3448869 (-) 723 WP_047183272.1 comF operon protein ComFC Machinery gene
  ABA10_RS17705 (ABA10_17705) comFB 3448833..3449129 (-) 297 WP_015483764.1 late competence protein ComFB -
  ABA10_RS17710 (ABA10_17710) comFA 3449189..3450580 (-) 1392 WP_047183273.1 ATP-dependent helicase ComFA Machinery gene
  ABA10_RS17715 (ABA10_17715) fakBA 3450686..3451531 (-) 846 WP_047183274.1 DegV family protein -
  ABA10_RS17720 (ABA10_17720) degU 3451629..3452318 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  ABA10_RS17725 (ABA10_17725) degS 3452401..3453558 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27553.74 Da        Isoelectric Point: 8.9656

>NTDB_id=146770 ABA10_RS17700 WP_047183272.1 3448147..3448869(-) (comFC) [Bacillus subtilis strain UD1022]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLNKITGHICTLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSLTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSTEGMNIILIDDLYTTGATLHFAARCLLEKGNAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=146770 ABA10_RS17700 WP_047183272.1 3448147..3448869(-) (comFC) [Bacillus subtilis strain UD1022]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAATAAAATCACAGGACATA
TTTGCACTCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATTAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTTAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGACACAAAAAATAATTCAACAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAACGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.083

100

0.971

Multiple sequence alignment