Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABA10_RS12785 Genome accession   NZ_CP011534
Coordinates   2489337..2489954 (-) Length   205 a.a.
NCBI ID   WP_047182900.1    Uniprot ID   -
Organism   Bacillus subtilis strain UD1022     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2484337..2494954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABA10_RS12760 (ABA10_12760) rpsT 2484639..2484905 (+) 267 WP_003229989.1 30S ribosomal protein S20 -
  ABA10_RS12765 (ABA10_12765) holA 2484920..2485963 (-) 1044 WP_047182898.1 DNA polymerase III subunit delta -
  ABA10_RS21710 - 2486003..2486152 (-) 150 WP_003229985.1 hypothetical protein -
  ABA10_RS21200 (ABA10_12770) yqzM 2486193..2486327 (+) 135 WP_003229983.1 YqzM family protein -
  ABA10_RS12775 (ABA10_12775) comEC 2486367..2488697 (-) 2331 WP_047182899.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABA10_RS12780 (ABA10_12780) comEB 2488701..2489270 (-) 570 WP_003229978.1 ComE operon protein 2 -
  ABA10_RS12785 (ABA10_12785) comEA 2489337..2489954 (-) 618 WP_047182900.1 competence protein ComEA Machinery gene
  ABA10_RS12790 (ABA10_12790) comER 2490038..2490859 (+) 822 WP_047182901.1 late competence protein ComER -
  ABA10_RS12795 (ABA10_12795) yqeM 2490925..2491668 (-) 744 WP_029317885.1 class I SAM-dependent methyltransferase -
  ABA10_RS12800 (ABA10_12800) rsfS 2491665..2492021 (-) 357 WP_014480315.1 ribosome silencing factor -
  ABA10_RS12805 (ABA10_12805) yqeK 2492039..2492599 (-) 561 WP_015483448.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABA10_RS12810 (ABA10_12810) nadD 2492589..2493158 (-) 570 WP_004398676.1 nicotinate-nucleotide adenylyltransferase -
  ABA10_RS12815 (ABA10_12815) yhbY 2493170..2493460 (-) 291 WP_003226133.1 ribosome assembly RNA-binding protein YhbY -
  ABA10_RS12820 (ABA10_12820) aroE 2493454..2494296 (-) 843 WP_015384136.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 21789.57 Da        Isoelectric Point: 4.9552

>NTDB_id=146755 ABA10_RS12785 WP_047182900.1 2489337..2489954(-) (comEA) [Bacillus subtilis strain UD1022]
MNWLNQHKKAIILAASAAVFTAIMIVLATGKNKEPVKQAVPTETENTVVKQEANNDKSNETIVIDIKGAVQHPGVYEMRT
GDRVSQAIEKAGGTSEQADEAQVNLAEILQDGTVVYIPKKGEETAVQQGGGVSVQNDGGKGALVNINTATLEELQGISGV
GPSKAEAIIAYREENGRFQTIEDITKVSGIGEKSFEKIKSSITVK

Nucleotide


Download         Length: 618 bp        

>NTDB_id=146755 ABA10_RS12785 WP_047182900.1 2489337..2489954(-) (comEA) [Bacillus subtilis strain UD1022]
ATGAATTGGTTGAATCAGCATAAGAAAGCAATTATTTTAGCGGCTTCTGCGGCTGTTTTCACAGCGATTATGATCGTTCT
TGCCACAGGGAAAAATAAAGAGCCGGTGAAGCAAGCTGTACCAACAGAGACAGAAAATACAGTGGTAAAGCAGGAAGCAA
ACAACGACAAGTCAAACGAAACAATTGTGATAGACATCAAAGGTGCTGTTCAGCATCCTGGCGTTTATGAAATGCGTACA
GGGGACAGAGTATCTCAGGCAATTGAGAAAGCGGGCGGGACCAGTGAACAAGCAGACGAAGCGCAAGTAAATTTGGCGGA
GATTCTGCAGGACGGGACAGTGGTGTACATCCCGAAAAAGGGAGAGGAAACAGCAGTGCAGCAAGGTGGCGGAGTGTCTG
TCCAAAACGATGGAGGGAAGGGAGCGCTGGTGAATATCAATACAGCAACCTTAGAGGAGTTACAAGGCATCTCAGGGGTG
GGGCCATCCAAAGCTGAAGCTATTATTGCATACCGGGAAGAAAACGGTCGTTTCCAAACAATTGAAGATATTACTAAGGT
TTCAGGAATAGGTGAAAAGTCATTTGAAAAAATAAAGTCTTCCATTACAGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(63-118)

Helix-hairpin-helix motif (HHH_3)

(142-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

98.049

100

0.98
  comEA Staphylococcus aureus MW2

37.273

100

0.4
  comEA Staphylococcus aureus N315

36.364

100

0.39

Multiple sequence alignment