Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   AA961_RS07520 Genome accession   NZ_CP011528
Coordinates   1528870..1529316 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RKI4     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1523870..1534316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA961_RS07490 (AA961_07490) gcvPA 1524796..1526142 (-) 1347 WP_000019690.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  AA961_RS07495 (AA961_07495) gcvT 1526162..1527253 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  AA961_RS07500 (AA961_07500) - 1527412..1527936 (-) 525 WP_001015120.1 shikimate kinase -
  AA961_RS14715 (AA961_07505) - 1527926..1528072 (-) 147 WP_001792109.1 hypothetical protein -
  AA961_RS07510 (AA961_07510) comGF 1528169..1528666 (-) 498 WP_029694050.1 competence type IV pilus minor pilin ComGF Machinery gene
  AA961_RS07515 (AA961_07515) comGE 1528584..1528883 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  AA961_RS07520 (AA961_07520) comGD 1528870..1529316 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  AA961_RS07525 (AA961_07525) comGC 1529294..1529605 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  AA961_RS07530 (AA961_07530) comGB 1529619..1530689 (-) 1071 WP_047928470.1 competence type IV pilus assembly protein ComGB Machinery gene
  AA961_RS07535 (AA961_07535) comGA 1530661..1531635 (-) 975 WP_001633882.1 competence type IV pilus ATPase ComGA Machinery gene
  AA961_RS07540 (AA961_07540) - 1531687..1532310 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  AA961_RS07545 (AA961_07545) - 1532307..1532636 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  AA961_RS07550 (AA961_07550) - 1532636..1533622 (-) 987 WP_047928471.1 ROK family glucokinase -
  AA961_RS07555 (AA961_07555) - 1533619..1533822 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=146644 AA961_RS07520 WP_001788899.1 1528870..1529316(-) (comGD) [Staphylococcus aureus strain RKI4]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=146644 AA961_RS07520 WP_001788899.1 1528870..1529316(-) (comGD) [Staphylococcus aureus strain RKI4]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1

Multiple sequence alignment