Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   AA961_RS01635 Genome accession   NZ_CP011528
Coordinates   358308..358811 (+) Length   167 a.a.
NCBI ID   WP_047928160.1    Uniprot ID   -
Organism   Staphylococcus aureus strain RKI4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 353308..363811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA961_RS01605 (AA961_01605) - 354245..355090 (+) 846 WP_001566903.1 ParB/RepB/Spo0J family partition protein -
  AA961_RS01610 (AA961_01610) - 355247..356128 (+) 882 WP_001077602.1 mechanosensitive ion channel family protein -
  AA961_RS01615 (AA961_01615) - 356158..356361 (+) 204 WP_000157345.1 DUF951 domain-containing protein -
  AA961_RS01620 (AA961_01620) ychF 356373..357470 (+) 1098 WP_001218732.1 redox-regulated ATPase YchF -
  AA961_RS01625 (AA961_01625) - 357556..357747 (-) 192 WP_001052483.1 hypothetical protein -
  AA961_RS01630 (AA961_01630) rpsF 357991..358287 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  AA961_RS01635 (AA961_01635) ssbA 358308..358811 (+) 504 WP_047928160.1 single-stranded DNA-binding protein Machinery gene
  AA961_RS01640 (AA961_01640) rpsR 358863..359105 (+) 243 WP_000897044.1 30S ribosomal protein S18 -
  AA961_RS01645 (AA961_01645) - 359371..360309 (-) 939 WP_001817700.1 Abi family protein -
  AA961_RS15790 - 360348..361048 (-) 701 Protein_322 tyrosine-type recombinase/integrase -
  AA961_RS01660 (AA961_01660) selX 361184..361795 (+) 612 WP_000473141.1 staphylococcal enterotoxin-like toxin X -
  AA961_RS01665 (AA961_01665) - 362164..362532 (+) 369 WP_000849167.1 YxeA family protein -
  AA961_RS01670 (AA961_01670) - 362711..363283 (+) 573 WP_000769722.1 PepSY domain-containing protein -
  AA961_RS01675 (AA961_01675) - 363421..363684 (-) 264 WP_001055897.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18509.09 Da        Isoelectric Point: 4.7305

>NTDB_id=146627 AA961_RS01635 WP_047928160.1 358308..358811(+) (ssbA) [Staphylococcus aureus strain RKI4]
MLNRVVLVGRLTKDPEYRATPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRRQADNVNNYLSKGSLAGVDGRLQSR
NYENQEGRRVFVTEVVCDSVQFLEPKNAQQNGGQRQQNEFQDYGQGFGGQQSGQNNSYNNSSNTKQSDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=146627 AA961_RS01635 WP_047928160.1 358308..358811(+) (ssbA) [Staphylococcus aureus strain RKI4]
ATGCTAAATAGAGTTGTATTAGTAGGTCGTTTAACGAAAGATCCGGAATACAGAGCCACTCCCTCAGGTGTGAGTGTAGC
GACATTCACTCTTGCAGTAAATCGTACGTTCACGAATGCTCAAGGGGAGCGCGAAGCAGATTTTATTAACTGTGTTGTTT
TTAGAAGACAAGCAGATAATGTAAATAACTATTTATCTAAAGGTAGTTTAGCTGGTGTAGATGGTCGCTTACAATCCCGT
AATTATGAAAATCAAGAAGGTCGTCGTGTGTTTGTTACTGAAGTTGTATGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TGCGCAACAAAATGGTGGCCAACGTCAACAAAATGAATTCCAAGATTACGGTCAAGGATTCGGTGGTCAACAATCAGGAC
AAAACAATTCGTACAATAATTCATCAAACACGAAACAATCTGATAATCCATTTGCAAATGCAAACGGACCGATTGATATA
AGTGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

54.971

100

0.563
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.473

0.371

Multiple sequence alignment