Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   AYM25_RS06405 Genome accession   NZ_CP014407
Coordinates   1239727..1241787 (+) Length   686 a.a.
NCBI ID   WP_001151499.1    Uniprot ID   A0A0H2XIE8
Organism   Staphylococcus aureus strain USA300-SUR12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1234727..1246787
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM25_RS06380 (AYM25_06150) rpe 1235198..1235842 (+) 645 WP_000164332.1 ribulose-phosphate 3-epimerase -
  AYM25_RS06385 (AYM25_06155) - 1235849..1236490 (+) 642 WP_000547905.1 thiamine diphosphokinase -
  AYM25_RS06390 (AYM25_06160) rpmB 1236871..1237059 (-) 189 WP_000517908.1 50S ribosomal protein L28 -
  AYM25_RS06395 (AYM25_06165) - 1237502..1237876 (+) 375 WP_000171418.1 Asp23/Gls24 family envelope stress response protein -
  AYM25_RS06400 (AYM25_06170) fakA 1237891..1239537 (+) 1647 WP_000623903.1 fatty acid kinase catalytic subunit FakA -
  AYM25_RS06405 (AYM25_06175) recG 1239727..1241787 (+) 2061 WP_001151499.1 ATP-dependent DNA helicase RecG Machinery gene
  AYM25_RS06410 (AYM25_06180) fapR 1241990..1242562 (+) 573 WP_001548538.1 transcription factor FapR -
  AYM25_RS06415 (AYM25_06185) plsX 1242567..1243553 (+) 987 WP_000239744.1 phosphate acyltransferase PlsX -
  AYM25_RS06420 (AYM25_06190) fabD 1243546..1244472 (+) 927 WP_000047348.1 ACP S-malonyltransferase -
  AYM25_RS06425 (AYM25_06195) fabG 1244465..1245199 (+) 735 WP_000167269.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  AYM25_RS06435 (AYM25_06205) - 1245442..1245675 (+) 234 WP_000426914.1 acyl carrier protein -
  AYM25_RS06440 (AYM25_06210) rnc 1245791..1246522 (+) 732 WP_000043237.1 ribonuclease III -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78342.91 Da        Isoelectric Point: 6.2483

>NTDB_id=146596 AYM25_RS06405 WP_001151499.1 1239727..1241787(+) (recG) [Staphylococcus aureus strain USA300-SUR12]
MAKVNLIESPYSLLQLKGIGPKKIEVLQQLNIHTVEDLVLYLPTRYEDNTVIDLNQAEDQSNVTIEGQVYTAPVVAFFGR
NKSKLTVHLMVNNIAVKCIFFNQPYLKKKIELNQTITVKGKWNRVKQEITGNRVFFNSQGTQTQENADVQLEPVYRIKEG
IKQKQIRDQIRQALNDVTIHEWLTDELREKYKLETLDFTLNTLHHPKSKEDLLRARRTYAFTELFLFELRMQWLNRLEKS
SDEAIEIDYDIDQVKSFIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQSALMV
PTEILAEQHAESLMALFGDSMNVALLTGSVKGKKRKILLEQLENGTIDCLIGTHALIQDDVIFHNVGLVITDEQHRFGVN
QRQLLREKGAMTNVLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIITTWAKHEQYDKVLMQMTSELKKGRQAYVIC
PLIESSEHLEDVQNVVALYESLQQYYGVSRVGLLHGKLSADEKDEVMQKFSNHEINVLVSTTVVEVGVNVPNATFMMIYD
ADRFGLSTLHQLRGRVGRSDQQSYCVLIASPKTETGIERMTIMTQTTDGFELSERDLEMRGPGDFFGVKQSGLPDFLVAN
LVEDYRMLEVARDEAAELIQSGVFFENTYQHLRHFVEENLLHRSFD

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=146596 AYM25_RS06405 WP_001151499.1 1239727..1241787(+) (recG) [Staphylococcus aureus strain USA300-SUR12]
TTGGCTAAAGTAAACTTAATAGAAAGTCCATATTCTCTTTTACAATTAAAAGGTATAGGTCCTAAGAAAATAGAAGTATT
GCAACAACTAAATATTCATACAGTGGAAGATCTTGTTCTTTATTTGCCAACTAGATATGAAGATAATACAGTGATTGATT
TGAATCAAGCAGAAGATCAATCTAACGTTACGATAGAAGGACAAGTATATACAGCTCCAGTAGTTGCATTTTTTGGAAGA
AATAAATCAAAATTAACCGTTCATTTAATGGTAAATAATATTGCTGTCAAATGTATTTTTTTCAATCAACCGTATTTAAA
AAAGAAAATCGAATTAAATCAAACTATAACTGTTAAAGGTAAGTGGAATAGGGTTAAACAGGAAATTACTGGTAATAGGG
TTTTCTTTAATTCACAAGGGACACAAACTCAAGAAAACGCAGATGTTCAATTAGAACCAGTCTATCGTATTAAGGAAGGT
ATTAAACAAAAGCAAATACGAGACCAAATTAGACAAGCGTTAAATGATGTGACAATTCATGAATGGTTAACTGATGAACT
AAGAGAAAAATATAAATTAGAGACCTTGGACTTTACTTTGAACACATTACATCATCCTAAAAGTAAAGAGGATTTATTAC
GTGCTCGTAGAACCTATGCATTTACTGAACTGTTTTTATTCGAATTACGTATGCAATGGCTAAATAGATTAGAAAAGTCA
TCTGACGAAGCAATTGAAATTGATTATGACATAGACCAAGTTAAATCATTTATTGATCGTTTACCTTTTGAACTAACTGA
AGCACAGAAATCCAGTGTTAATGAAATTTTTAGAGATTTAAAAGCACCAATACGTATGCATCGATTACTTCAAGGTGATG
TAGGTTCAGGAAAAACAGTAGTTGCTGCAATTTGTATGTATGCGTTAAAAACTGCTGGTTATCAATCAGCATTGATGGTA
CCAACTGAAATTTTAGCAGAGCAACATGCTGAAAGTTTAATGGCTTTATTTGGAGATTCTATGAACGTTGCATTGTTAAC
TGGGTCAGTAAAAGGTAAGAAACGAAAGATACTTTTAGAACAACTTGAAAATGGTACGATTGATTGTTTAATTGGAACCC
ATGCTTTGATTCAAGATGATGTGATTTTCCATAATGTTGGTTTAGTAATTACAGATGAACAACATCGATTTGGTGTGAAT
CAACGCCAGCTTTTAAGAGAAAAAGGTGCAATGACGAATGTGTTATTTATGACAGCAACGCCGATACCAAGAACACTAGC
AATATCAGTTTTTGGTGAGATGGATGTGTCTTCAATTAAACAATTACCAAAAGGTCGTAAACCTATCATTACTACTTGGG
CAAAGCATGAGCAATACGATAAAGTTTTGATGCAAATGACCTCAGAGTTGAAAAAAGGTCGTCAAGCATATGTCATTTGC
CCGCTAATAGAAAGTTCTGAGCATCTCGAAGATGTTCAAAATGTTGTCGCATTGTACGAGTCTTTACAACAGTATTATGG
TGTTTCCCGTGTAGGGTTATTGCATGGTAAGTTATCTGCCGATGAAAAAGATGAGGTCATGCAAAAGTTTAGTAATCATG
AGATAAATGTTTTAGTTTCTACTACTGTTGTTGAAGTAGGTGTTAATGTACCGAATGCAACTTTTATGATGATTTATGAT
GCGGATCGCTTTGGATTATCAACTTTACATCAGTTACGCGGTCGTGTAGGTAGAAGTGACCAGCAAAGTTACTGTGTTTT
AATTGCATCCCCTAAAACAGAAACAGGAATTGAAAGAATGACAATTATGACACAAACAACGGATGGATTTGAATTGAGTG
AACGAGACTTAGAAATGCGTGGTCCTGGAGATTTCTTTGGTGTTAAACAAAGTGGATTGCCAGATTTCTTAGTTGCCAAT
TTAGTTGAAGATTATCGTATGTTAGAAGTTGCTCGTGATGAAGCAGCTGAACTTATTCAATCTGGCGTATTCTTTGAAAA
TACGTATCAACATTTACGTCATTTTGTTGAAGAAAATTTATTACATCGTAGTTTTGACTAA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(267-422)

Helicase conserved C-terminal domain (Helicase_C)

(464-579)

RecG wedge domain (RecG_wedge)

(16-175)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(606-663)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2XIE8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Bacillus subtilis subsp. subtilis str. 168

53.073

97.23

0.516
  recG/mmsA Streptococcus pneumoniae R6

50.233

94.023

0.472
  recG/mmsA Streptococcus pneumoniae R36A

50.233

94.023

0.472
  recG Neisseria meningitidis strain C311

39.97

97.376

0.389

Multiple sequence alignment