Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   AA957_RS25965 Genome accession   NZ_CP011507
Coordinates   5708025..5710250 (+) Length   741 a.a.
NCBI ID   WP_235437092.1    Uniprot ID   -
Organism   Pseudomonas trivialis strain IHBB745     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5703025..5715250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA957_RS25950 (AA957_25960) - 5705278..5706006 (+) 729 WP_049712703.1 response regulator transcription factor -
  AA957_RS25955 (AA957_25965) - 5705993..5707363 (+) 1371 WP_049712704.1 sensor histidine kinase -
  AA957_RS25960 (AA957_25970) - 5707374..5707889 (-) 516 WP_049712705.1 DUF2062 domain-containing protein -
  AA957_RS25965 (AA957_25975) comA 5708025..5710250 (+) 2226 WP_235437092.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AA957_RS25970 (AA957_25980) exbB 5710334..5710969 (+) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AA957_RS25975 (AA957_25985) - 5710966..5711394 (+) 429 WP_049712707.1 ExbD/TolR family protein -
  AA957_RS25980 (AA957_25990) lpxK 5711394..5712404 (+) 1011 WP_049712708.1 tetraacyldisaccharide 4'-kinase -
  AA957_RS25985 (AA957_25995) - 5712429..5712614 (+) 186 WP_003174668.1 Trm112 family protein -
  AA957_RS25990 (AA957_26000) kdsB 5712611..5713375 (+) 765 WP_049712709.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AA957_RS25995 (AA957_26005) - 5713375..5713839 (+) 465 WP_049712710.1 low molecular weight protein-tyrosine-phosphatase -
  AA957_RS26000 (AA957_26010) murB 5713836..5714855 (+) 1020 WP_049712711.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80574.85 Da        Isoelectric Point: 10.8687

>NTDB_id=146425 AA957_RS25965 WP_235437092.1 5708025..5710250(+) (comA) [Pseudomonas trivialis strain IHBB745]
MRTGMFALALGLLALRFLPVLPPTGWLIALLVLALMLLPFRTYPVAFFLLGLSWACISAQWALDDRLKLALDGQTRWVEG
RVIGLPQQTGEGVRFELADSRSRNARLPKRIRVSWRGGPPVRSGERWRLAITLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLAPARSAWRDGVRQRLLAVDAFGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFTAALSYGLLAGFGVPVQRACVMVGLVLLWRLRFRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGAWSVWQAWTRPQWLIAIGLFPVLLVLGLPISLSAPLANLVAVPWISLVVLPLAL
LGTALLPLPFMGEGLLWLAGGALDGLFKALAWLAGQLPAWIPAEVPLGYWLLSLLGALLFLLPKGVPFRVLGLPMLLLAV
FPPRELVPHGQVEVVQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLQKLGVKALDMMLISHADADHAGGA
AAIAKGMPIKRVVGGETEGLPAFLGTQPCNSGERWTWDGVTFELWQWPDAISGNPKSCVLQVQANGERLLLTGDIDRAAE
QAMLASPLAVSTDWLQAPHHGSRSSSSWTFVERLAPRSVLISRGRSNAFGHPHPQVMARYQRLGSQVYDSAEQGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=146425 AA957_RS25965 WP_235437092.1 5708025..5710250(+) (comA) [Pseudomonas trivialis strain IHBB745]
ATGAGAACAGGGATGTTCGCGTTGGCGCTGGGGTTACTGGCCCTGCGTTTTTTACCGGTATTGCCGCCCACGGGATGGCT
GATCGCCTTGCTGGTGCTGGCGTTGATGCTGTTGCCGTTTCGCACTTACCCAGTAGCGTTTTTCCTGCTGGGGCTGAGTT
GGGCGTGCATCAGTGCGCAGTGGGCGCTGGATGATCGCCTCAAGCTGGCTCTGGACGGCCAGACACGCTGGGTGGAGGGG
CGCGTCATTGGGCTGCCGCAGCAGACGGGTGAGGGCGTGCGTTTCGAATTAGCCGACAGCCGGTCGCGAAATGCTCGGTT
GCCCAAACGCATCCGAGTGTCCTGGCGTGGCGGACCGCCTGTGCGCAGCGGCGAACGCTGGCGCCTGGCAATCACCCTGA
AGCGGCCGGCCGGTCTGCTGAATTTTCACGGATTTGACCAGGAAGCCTGGCTGCTCGCCCAGCGCATTGGTGCCACGGGC
ACGGTGAAAGACGGCGAACGTCTGGCTCCGGCGCGCAGCGCTTGGCGTGATGGCGTGCGCCAGCGCTTGCTGGCGGTGGA
TGCCTTTGGTCGGGAAGCAGGCCTGATCGCCCTGGTGCTGGGGGACGGCTCTGGATTGGCCGCCGCCGATTGGCAGGTGT
TACAGGACACCGGCACTGTGCATCTGCTGGTTATATCCGGCCAGCACATCGGCTTGCTGGCGGGCTTGATCTACGGGTTG
ATCGCCGGGTTGGCACGTTATGGGTGCTGGCCCCGAACCTGGCCGTGGCTGCCGTGGGCGTGTGGCCTGGCGTTTACGGC
TGCACTGAGTTACGGCTTGCTCGCCGGGTTTGGCGTGCCGGTGCAGCGCGCCTGTGTGATGGTCGGTCTGGTGTTGTTGT
GGCGGCTGCGCTTTCGTCACCTGGGGCTGTGGTGGCCGTTGCTGTTGGCGCTCAATGGAGTGTTAGTCCTGGAGCCGTTG
GCCAGTTTGCAGCCGGGGTTCTGGTTGTCGTTTGCGGCGGTGGCAGTGCTGGTCCTGGCGTTTGGAGGGCGGTTGGGGGC
GTGGAGCGTGTGGCAGGCGTGGACCCGTCCCCAGTGGTTGATTGCGATTGGGTTGTTTCCTGTCTTGCTGGTGCTGGGAT
TACCCATCAGCCTGAGTGCGCCGCTGGCCAATCTGGTCGCCGTGCCCTGGATCAGCCTGGTGGTGTTGCCGCTGGCATTG
CTGGGAACAGCGTTGCTGCCGTTGCCGTTTATGGGGGAGGGATTGCTGTGGCTGGCAGGCGGAGCGTTGGATGGGTTGTT
CAAGGCCTTGGCGTGGCTTGCCGGACAACTGCCTGCCTGGATTCCGGCCGAGGTACCGCTGGGGTATTGGCTGCTGAGCC
TGCTCGGTGCGCTGCTATTCCTGTTGCCCAAGGGCGTGCCATTTCGGGTGCTGGGCTTGCCGATGCTGTTGCTGGCGGTA
TTTCCCCCGCGTGAACTGGTGCCCCATGGGCAAGTGGAGGTGGTGCAGTTGGACGTCGGCCAGGGGCAGTCGCTGATCCT
GCGCACTCGCCATCACACCTTGCTCTACGACGCCGGGCCGCGCTCCGGAACCTTTGACCTGGGTGCGCGTGTGGTGTTGC
CGTCTCTGCAAAAGCTCGGGGTCAAGGCGTTAGACATGATGTTGATCAGCCACGCCGACGCGGATCATGCCGGCGGCGCG
GCGGCGATTGCCAAGGGGATGCCGATCAAGCGCGTGGTGGGCGGGGAAACCGAGGGCCTGCCGGCGTTTCTCGGTACGCA
GCCGTGCAACAGTGGTGAACGATGGACCTGGGACGGTGTGACGTTCGAGCTGTGGCAGTGGCCGGACGCTATCAGCGGCA
ACCCGAAGTCCTGCGTGTTGCAGGTGCAGGCCAATGGTGAGCGCCTACTGTTGACCGGCGATATCGACCGCGCGGCGGAA
CAAGCAATGCTCGCATCACCTCTGGCAGTGTCCACCGATTGGTTGCAGGCGCCACACCATGGCAGTCGCAGTTCTTCGTC
TTGGACGTTTGTGGAGCGCCTTGCCCCTCGCTCTGTGCTTATTTCGCGGGGGCGCAGCAATGCATTCGGCCATCCCCATC
CGCAGGTGATGGCGCGCTACCAGCGGTTGGGCAGCCAGGTCTATGACAGCGCCGAGCAGGGCGCCGTGCGCCTGCAACTG
GGGGCGTTTGCACCGCCGGTTGTTGCGCGCAGTCAACGCAGGTTCTGGCGTGAGCGGTTACCTTAG

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-651)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.972

97.166

0.592
  comA Ralstonia pseudosolanacearum GMI1000

35.597

100

0.382

Multiple sequence alignment