Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   AA957_RS25970 Genome accession   NZ_CP011507
Coordinates   5710334..5710969 (+) Length   211 a.a.
NCBI ID   WP_033896796.1    Uniprot ID   -
Organism   Pseudomonas trivialis strain IHBB745     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5705334..5715969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA957_RS25955 (AA957_25965) - 5705993..5707363 (+) 1371 WP_049712704.1 sensor histidine kinase -
  AA957_RS25960 (AA957_25970) - 5707374..5707889 (-) 516 WP_049712705.1 DUF2062 domain-containing protein -
  AA957_RS25965 (AA957_25975) comA 5708025..5710250 (+) 2226 WP_235437092.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AA957_RS25970 (AA957_25980) exbB 5710334..5710969 (+) 636 WP_033896796.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  AA957_RS25975 (AA957_25985) - 5710966..5711394 (+) 429 WP_049712707.1 ExbD/TolR family protein -
  AA957_RS25980 (AA957_25990) lpxK 5711394..5712404 (+) 1011 WP_049712708.1 tetraacyldisaccharide 4'-kinase -
  AA957_RS25985 (AA957_25995) - 5712429..5712614 (+) 186 WP_003174668.1 Trm112 family protein -
  AA957_RS25990 (AA957_26000) kdsB 5712611..5713375 (+) 765 WP_049712709.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  AA957_RS25995 (AA957_26005) - 5713375..5713839 (+) 465 WP_049712710.1 low molecular weight protein-tyrosine-phosphatase -
  AA957_RS26000 (AA957_26010) murB 5713836..5714855 (+) 1020 WP_049712711.1 UDP-N-acetylmuramate dehydrogenase -
  AA957_RS26005 (AA957_26015) - 5714919..5715590 (-) 672 WP_003174664.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.05 Da        Isoelectric Point: 7.3615

>NTDB_id=146426 AA957_RS25970 WP_033896796.1 5710334..5710969(+) (exbB) [Pseudomonas trivialis strain IHBB745]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWAWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=146426 AA957_RS25970 WP_033896796.1 5710334..5710969(+) (exbB) [Pseudomonas trivialis strain IHBB745]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTCTTGGGGCAGGTCTGGGCCTGGATCAAGAACA
AGCAGCTGGACAAGGAAAAACTCAAGGAACTGCGCGCCAACTCCCCGTTGGGTGAAATCCTTGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCCGCCCGCGTCATCCATGAACTGGAGCGCTACAT
CAATGCCCTCGGCACCATCGCTGCCATGGCGCCGTTGCTCGGTTTGCTCGGGACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTATTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACCGCA
GCGGGCTTGATGGTCGGTATTCCTTCGGTGTTCTTCCACCGTTTCCTGCAACGTCGCATCGATGAACTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAGCTGGTGGAAGTCGTGCAGGGCGACCGTGACGTTGATCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848

Multiple sequence alignment