Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AA973_RS01630 Genome accession   NZ_CP011485
Coordinates   329727..330527 (+) Length   266 a.a.
NCBI ID   WP_064437352.1    Uniprot ID   A0A1A9H7C1
Organism   Helicobacter pylori strain ausabrJ05     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 324727..335527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AA973_RS01595 (AA973_01600) pseH 325222..325764 (+) 543 WP_064437346.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  AA973_RS01600 (AA973_01605) - 325697..326635 (-) 939 WP_064437347.1 tetraacyldisaccharide 4'-kinase -
  AA973_RS01605 (AA973_01610) - 326632..327414 (-) 783 WP_064437348.1 NAD+ synthase -
  AA973_RS01615 (AA973_01620) ilvC 327663..328655 (+) 993 WP_064437349.1 ketol-acid reductoisomerase -
  AA973_RS01620 (AA973_01625) minD 328679..329485 (+) 807 WP_064437350.1 septum site-determining protein MinD -
  AA973_RS01625 (AA973_01630) minE 329482..329715 (+) 234 WP_064437351.1 cell division topological specificity factor MinE -
  AA973_RS01630 (AA973_01635) dprA 329727..330527 (+) 801 WP_064437352.1 DNA-processing protein DprA Machinery gene
  AA973_RS01635 (AA973_01640) dprB 330524..330928 (+) 405 WP_064437353.1 Holliday junction resolvase RuvX Machinery gene
  AA973_RS01640 (AA973_01645) - 331102..331407 (+) 306 WP_064437354.1 hypothetical protein -
  AA973_RS01645 (AA973_01650) - 331391..331957 (+) 567 WP_064437355.1 hypothetical protein -
  AA973_RS01650 (AA973_01655) - 332101..333009 (-) 909 WP_064437356.1 RluA family pseudouridine synthase -
  AA973_RS01655 (AA973_01660) recJ 333009..334559 (-) 1551 WP_064437357.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29870.81 Da        Isoelectric Point: 8.7867

>NTDB_id=146257 AA973_RS01630 WP_064437352.1 329727..330527(+) (dprA) [Helicobacter pylori strain ausabrJ05]
MKSNFQYSALENIPKAFDILKDPPKKLYFAGDIKLLDAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDFIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAIIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDYHLKEMPEMKDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHIVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=146257 AA973_RS01630 WP_064437352.1 329727..330527(+) (dprA) [Helicobacter pylori strain ausabrJ05]
ATGAAAAGCAACTTCCAATACAGCGCGCTAGAGAATATCCCTAAAGCTTTTGATATCCTCAAAGACCCCCCTAAAAAGCT
CTATTTTGCGGGCGATATAAAGCTTTTAGACGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTATA
GCAAGCAACACACCATCACTCTAGCCAGAGAGCTTGCTAAAAATGGTGCGGTTATTGTGAGCGGAGGGGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTACCCAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTTATCTATCCCACGAA
CAATCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAGGATTTTATGCCTATTAAAG
GCTCTTTTTTAGCCAGAAACCGCCTGGTGATCGCTTTAAGCGATGCAATCATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTATTTGTTTTACCCCAGCGCTTGAATGAGAGCGATGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACT
ACCATTTAAAAGAAATGCCTGAAATGAAAGATGAATTTTTAGAATATTGTGCGAAAAACCCCAGCTATGAAGAAGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTGGGTAAGATCAAACGCATCAATCATATCGTGGTGTTAGCGTG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1A9H7C1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

96.617

100

0.966
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

47.598

86.09

0.41

Multiple sequence alignment