Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IMCC20628_RS09390 Genome accession   NZ_CP011479
Coordinates   1984569..1985096 (+) Length   175 a.a.
NCBI ID   WP_047030000.1    Uniprot ID   A0A0F7PLZ1
Organism   Hoeflea sp. IMCC20628     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1979569..1990096
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC20628_RS09375 (IMCC20628_01906) - 1979581..1980381 (-) 801 WP_047032421.1 DUF72 domain-containing protein -
  IMCC20628_RS09380 (IMCC20628_01907) - 1980596..1981081 (-) 486 WP_047029998.1 Hsp20/alpha crystallin family protein -
  IMCC20628_RS09385 (IMCC20628_01908) uvrA 1981247..1984165 (-) 2919 WP_047029999.1 excinuclease ABC subunit UvrA -
  IMCC20628_RS09390 (IMCC20628_01909) ssb 1984569..1985096 (+) 528 WP_047030000.1 single-stranded DNA-binding protein Machinery gene
  IMCC20628_RS09395 (IMCC20628_01910) - 1985159..1985572 (+) 414 WP_047030001.1 cupin domain-containing protein -
  IMCC20628_RS09400 (IMCC20628_01911) - 1985620..1985883 (+) 264 WP_047030002.1 hypothetical protein -
  IMCC20628_RS09405 (IMCC20628_01912) - 1985996..1986355 (+) 360 WP_245307941.1 VOC family protein -
  IMCC20628_RS09410 (IMCC20628_01913) - 1986450..1986845 (+) 396 WP_197078424.1 hypothetical protein -
  IMCC20628_RS09415 (IMCC20628_01914) - 1987009..1987311 (-) 303 WP_047030003.1 DUF1905 domain-containing protein -
  IMCC20628_RS09420 (IMCC20628_01915) - 1987323..1987952 (-) 630 WP_047030004.1 MarC family protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 18104.71 Da        Isoelectric Point: 5.9392

>NTDB_id=146181 IMCC20628_RS09390 WP_047030000.1 1984569..1985096(+) (ssb) [Hoeflea sp. IMCC20628]
MAGSVNKVILIGNLGADPDIKRTQDGRPIANLSIATSDSWRDKNTGERREKTEWHRVVIFNEGLCKIAENYLKKGSKVYI
EGQLQTRKWTDQSGQDKYSTEVVLQGFNGNLTMLDGRSEGGGGSGGGVSRGGDFGGGSSSGGDRGGSGGGNQSGGGFGGG
AGGGSSRDLDDDIPF

Nucleotide


Download         Length: 528 bp        

>NTDB_id=146181 IMCC20628_RS09390 WP_047030000.1 1984569..1985096(+) (ssb) [Hoeflea sp. IMCC20628]
ATGGCGGGAAGCGTCAACAAAGTCATTCTGATTGGCAATCTGGGCGCTGATCCGGATATCAAGCGGACTCAGGATGGCCG
GCCGATTGCCAATCTGTCGATCGCCACGTCGGACAGCTGGCGCGACAAGAATACCGGCGAACGGCGCGAAAAGACCGAAT
GGCACCGGGTTGTCATTTTCAATGAAGGTCTGTGCAAGATCGCCGAGAATTACCTGAAAAAGGGCTCCAAGGTCTATATC
GAGGGCCAGTTGCAGACCCGCAAATGGACCGACCAGTCCGGCCAGGACAAATATTCAACCGAAGTGGTGTTGCAGGGCTT
CAACGGCAACCTGACCATGCTCGACGGCCGCAGCGAAGGCGGCGGTGGTTCTGGTGGCGGCGTCAGCCGCGGCGGTGATT
TTGGCGGCGGCTCGTCATCGGGCGGTGACCGCGGCGGATCTGGCGGCGGCAATCAGTCGGGCGGCGGATTTGGCGGCGGC
GCCGGTGGCGGATCCTCCCGCGATCTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7PLZ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.5

100

0.52
  ssb Vibrio cholerae strain A1552

50.289

98.857

0.497
  ssb Neisseria meningitidis MC58

35.754

100

0.366
  ssb Neisseria gonorrhoeae MS11

35.754

100

0.366

Multiple sequence alignment