Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   AYM13_RS08820 Genome accession   NZ_CP014362
Coordinates   1722735..1724009 (+) Length   424 a.a.
NCBI ID   WP_000102735.1    Uniprot ID   -
Organism   Staphylococcus aureus strain USA300-SUR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717735..1729009
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AYM13_RS08790 (AYM13_08585) mnmA 1717937..1719055 (-) 1119 WP_000066097.1 tRNA 2-thiouridine(34) synthase MnmA -
  AYM13_RS08795 (AYM13_08590) - 1719056..1720198 (-) 1143 WP_000409167.1 cysteine desulfurase family protein -
  AYM13_RS08800 (AYM13_08595) - 1720510..1721523 (+) 1014 WP_000985886.1 LLM class flavin-dependent oxidoreductase -
  AYM13_RS08805 (AYM13_08600) - 1721760..1721906 (-) 147 WP_000009238.1 SAS049 family protein -
  AYM13_RS08810 (AYM13_08605) - 1721946..1722128 (-) 183 WP_000752913.1 CsbD family protein -
  AYM13_RS08815 (AYM13_08610) - 1722228..1722650 (-) 423 WP_000704122.1 Rrf2 family transcriptional regulator -
  AYM13_RS08820 (AYM13_08615) rarA 1722735..1724009 (+) 1275 WP_000102735.1 replication-associated recombination protein A Machinery gene
  AYM13_RS08825 (AYM13_08620) - 1724170..1724943 (-) 774 WP_000682646.1 tRNA threonylcarbamoyladenosine dehydratase -
  AYM13_RS08830 (AYM13_08625) - 1724943..1725071 (-) 129 WP_001790559.1 hypothetical protein -
  AYM13_RS08840 (AYM13_08635) aspS 1725404..1727170 (-) 1767 WP_000044799.1 aspartate--tRNA ligase -
  AYM13_RS08845 (AYM13_08640) hisS 1727186..1728448 (-) 1263 WP_000590826.1 histidine--tRNA ligase -

Sequence

Protein


Download         Length: 424 a.a.        Molecular weight: 47250.81 Da        Isoelectric Point: 8.3539

>NTDB_id=145653 AYM13_RS08820 WP_000102735.1 1722735..1724009(+) (rarA) [Staphylococcus aureus strain USA300-SUR1]
MSTEPLASRMRPKNIDEIISQQHLVGPRGIIRRMVDTKKLTSMIFYGPPGIGKTSIAKAISGSTQYKFRQLNAVTNTKKD
MQLVVEEAKMSGQVILLLDEIHRLDKAKQDFLLPHLENGKIVLIGATTSNPYHAINPAIRSRAQIFELYPLNDEDVRQAL
TRAIEDDENGLKTYQPKIDEDAMTYFSTQSQGDVRSALNALELAVLSADNDKDGYRHVTLQDAKDCLQKGAFVSDKDGDM
HYDVMSAFQKSIRGSDVNAALHYLARLIEAGDLPTIVRRLLVISYEDIGLASPNAGQRTLAAIESAERLGLPEARIPLSQ
AVIELCLSPKSNSAMSAIDSALSDIRNGHVGQIPNHLKDGHYQGAKDLGRSIGYKYPHQYVNGYVSQQYLPDKLKNKIYY
EPKTTSKSEQQLKEIYNNLLKQRP

Nucleotide


Download         Length: 1275 bp        

>NTDB_id=145653 AYM13_RS08820 WP_000102735.1 1722735..1724009(+) (rarA) [Staphylococcus aureus strain USA300-SUR1]
GTGAGTACAGAACCATTAGCATCGAGAATGCGCCCAAAAAATATAGATGAAATCATTTCCCAACAACATTTAGTTGGACC
AAGAGGCATTATCAGAAGAATGGTTGATACAAAAAAATTAACTTCAATGATTTTTTATGGTCCACCTGGTATAGGCAAAA
CAAGTATTGCCAAAGCAATTTCGGGCAGTACGCAATATAAATTCAGACAATTGAATGCTGTAACTAACACTAAAAAAGAT
ATGCAACTTGTTGTTGAAGAAGCTAAAATGTCTGGTCAAGTTATCTTGTTATTAGATGAAATACATCGACTAGATAAAGC
TAAACAAGACTTTTTATTACCTCATTTAGAAAATGGCAAAATCGTCTTGATCGGTGCTACAACTTCAAATCCTTATCATG
CTATCAATCCAGCGATTCGTTCAAGAGCGCAAATTTTCGAGTTATATCCTTTAAATGACGAAGATGTGCGCCAAGCGTTA
ACTCGTGCAATAGAAGATGATGAGAATGGTTTGAAAACATATCAACCCAAAATTGATGAAGATGCCATGACCTACTTTTC
TACACAAAGCCAAGGTGATGTTCGTAGTGCGTTAAATGCATTGGAATTAGCTGTATTAAGCGCAGATAATGACAAAGACG
GTTATCGACATGTTACATTGCAAGATGCTAAAGACTGTTTACAAAAAGGTGCATTTGTAAGTGACAAGGATGGTGACATG
CATTACGATGTTATGAGCGCTTTCCAAAAATCTATCCGTGGTAGCGACGTCAATGCCGCTTTACATTATTTAGCACGATT
AATTGAAGCTGGAGATTTACCTACAATAGTTCGACGATTACTTGTAATTAGCTATGAGGATATAGGCTTAGCCTCACCTA
ATGCTGGTCAGAGAACACTTGCTGCTATTGAATCAGCAGAACGTCTAGGTTTACCAGAAGCTAGAATTCCACTAAGCCAA
GCAGTAATCGAACTATGCTTATCACCTAAGTCAAATTCAGCAATGAGTGCCATTGATAGTGCATTGTCCGATATTAGAAA
CGGTCATGTGGGCCAAATTCCAAACCATTTAAAAGATGGACATTATCAAGGTGCTAAAGATCTAGGCCGATCTATTGGTT
ACAAATATCCACACCAATATGTTAATGGCTATGTTTCACAGCAATATTTACCTGATAAACTAAAAAACAAAATTTATTAC
GAACCAAAAACGACATCTAAAAGTGAACAACAACTCAAAGAAATATATAACAACTTACTTAAACAAAGGCCGTAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(175-253)

ATPase family associated with various cellular activities (AAA) (AAA)

(43-145)

MgsA AAA+ ATPase C terminal (MgsA_C)

(254-418)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

69.048

99.057

0.684

Multiple sequence alignment