Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CY94_RS12595 Genome accession   NZ_CP011398
Coordinates   2478688..2479167 (-) Length   159 a.a.
NCBI ID   WP_046811264.1    Uniprot ID   -
Organism   Listeria monocytogenes strain CFSAN008100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2473688..2484167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CY94_RS12550 (CY94_12350) - 2474214..2475545 (-) 1332 WP_010990214.1 PBSX family phage terminase large subunit -
  CY94_RS12555 (CY94_12355) - 2475514..2476056 (-) 543 WP_010990213.1 terminase small subunit -
  CY94_RS12560 (CY94_12360) - 2476114..2476377 (-) 264 WP_010990212.1 DUF6275 family protein -
  CY94_RS12565 (CY94_12365) - 2476404..2476703 (-) 300 WP_009911405.1 phage protein -
  CY94_RS12570 (CY94_12370) - 2477098..2477532 (-) 435 WP_003735131.1 ArpU family phage packaging/lysis transcriptional regulator -
  CY94_RS12575 (CY94_12375) - 2477551..2477715 (-) 165 WP_031644575.1 hypothetical protein -
  CY94_RS12580 (CY94_12380) - 2477844..2478248 (-) 405 WP_031644573.1 endodeoxyribonuclease -
  CY94_RS12585 - 2478214..2478354 (-) 141 WP_003759675.1 BH0509 family protein -
  CY94_RS12590 (CY94_12385) - 2478351..2478656 (-) 306 WP_039382681.1 hypothetical protein -
  CY94_RS12595 (CY94_12390) ssbA 2478688..2479167 (-) 480 WP_046811264.1 single-stranded DNA-binding protein Machinery gene
  CY94_RS12600 (CY94_12395) - 2479167..2479445 (-) 279 WP_020830693.1 hypothetical protein -
  CY94_RS12605 (CY94_12400) - 2479442..2479843 (-) 402 WP_020830692.1 hypothetical protein -
  CY94_RS12610 (CY94_12405) - 2479840..2480040 (-) 201 WP_046811265.1 hypothetical protein -
  CY94_RS12620 (CY94_12415) - 2480244..2480723 (-) 480 WP_322115159.1 pentapeptide repeat-containing protein -
  CY94_RS16275 - 2480748..2480924 (-) 177 Protein_2439 pentapeptide repeat-containing protein -
  CY94_RS16120 - 2480921..2481094 (-) 174 WP_003731701.1 hypothetical protein -
  CY94_RS12625 (CY94_12425) - 2481095..2481616 (-) 522 WP_046811267.1 YopX family protein -
  CY94_RS12630 (CY94_12430) - 2481613..2482161 (-) 549 WP_031670092.1 DUF1642 domain-containing protein -
  CY94_RS12635 (CY94_12435) - 2482158..2482838 (-) 681 WP_023548471.1 hypothetical protein -
  CY94_RS12640 (CY94_12440) - 2482851..2483795 (-) 945 WP_031644274.1 site-specific integrase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17685.54 Da        Isoelectric Point: 5.2868

>NTDB_id=145556 CY94_RS12595 WP_046811264.1 2478688..2479167(-) (ssbA) [Listeria monocytogenes strain CFSAN008100]
MMNRVVLVGRLTKDPDLRYTPAGVAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFITEVVAESVQFLEPRNHAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFASEGKPIDINEDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=145556 CY94_RS12595 WP_046811264.1 2478688..2479167(-) (ssbA) [Listeria monocytogenes strain CFSAN008100]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCAGATTTACGTTACACTCCGGCTGGCGTGGCAGTTGC
GACTTTTACATTAGCTGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTCATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAACGTTGCTAATTTCTTGAAGAAGGGAAGCATGGCGGGTGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAGCGATGGTAAACGTGTTTTCATTACAGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCCAGAAA
CCACGCAGAAGGCGCTACATCAAATAATTATCAAAACCAAGCTAATTATTCAAATAACAATAAAACAAGCTCATATAGAG
CGGATACGAGCCAGAAGAGCGATTCATTTGCAAGTGAAGGTAAGCCGATTGATATTAATGAAGATGATTTGCCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.628

100

0.667
  ssb Latilactobacillus sakei subsp. sakei 23K

54.706

100

0.585
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.714

70.44

0.428

Multiple sequence alignment