Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   CD56_RS04845 Genome accession   NZ_CP011372
Coordinates   920499..921152 (+) Length   217 a.a.
NCBI ID   WP_047208365.1    Uniprot ID   A0A5L4JPI8
Organism   Campylobacter lari strain Slaughter Beach     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 915499..926152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD56_RS04820 (CD56_04805) - 915602..917122 (-) 1521 WP_039628409.1 inorganic phosphate transporter -
  CD56_RS04825 (CD56_04810) pdxA 917169..918269 (-) 1101 WP_047208362.1 4-hydroxythreonine-4-phosphate dehydrogenase -
  CD56_RS04830 (CD56_04815) - 918266..919033 (-) 768 WP_047208363.1 pyridoxine 5'-phosphate synthase -
  CD56_RS04835 (CD56_04820) - 919089..920048 (+) 960 WP_047208364.1 exopolyphosphatase -
  CD56_RS04840 (CD56_04825) - 920059..920502 (+) 444 WP_039618486.1 GatB/YqeY domain-containing protein -
  CD56_RS04845 (CD56_04830) CJE0566 920499..921152 (+) 654 WP_047208365.1 DNA/RNA non-specific endonuclease Regulator
  CD56_RS04850 (CD56_04835) dnaK 921184..923046 (-) 1863 WP_039641669.1 molecular chaperone DnaK -
  CD56_RS04855 (CD56_04840) grpE 923069..923578 (-) 510 WP_039628416.1 nucleotide exchange factor GrpE -
  CD56_RS04860 (CD56_04845) - 923575..924357 (-) 783 WP_047208366.1 HrcA family transcriptional regulator -
  CD56_RS08460 - 924596..924727 (+) 132 WP_256374638.1 hypothetical protein -
  CD56_RS04865 (CD56_04850) - 924716..925345 (-) 630 WP_047208367.1 hypothetical protein -
  CD56_RS04870 (CD56_04855) - 925342..925578 (-) 237 WP_047208368.1 hypothetical protein -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25930.85 Da        Isoelectric Point: 9.7361

>NTDB_id=145201 CD56_RS04845 WP_047208365.1 920499..921152(+) (CJE0566) [Campylobacter lari strain Slaughter Beach]
MKKVLTLCALALSSFAYTQYELHPSFKAYFKDCSLLMDKYYYINCYDYNYKGTKAIAYKLEAKILNQGHIKKRPRFQEDT
NIPKKYRTYWEDYLRSGYTRGHVVPNQSMNATPQAQLSTFLMSNITPQKKDINAEIWNEIEQRERYLAKKNKELEVLNLV
LYDDKPKRIKNNIAIPSFYVKILKAKNFSECYKVPNNDNFARFDRNYFKEDCKKYID

Nucleotide


Download         Length: 654 bp        

>NTDB_id=145201 CD56_RS04845 WP_047208365.1 920499..921152(+) (CJE0566) [Campylobacter lari strain Slaughter Beach]
ATGAAAAAAGTTTTAACACTTTGCGCCTTAGCTTTAAGCTCTTTTGCTTATACTCAATATGAATTACATCCTAGCTTTAA
AGCTTATTTTAAAGACTGTTCTTTATTGATGGATAAATATTATTATATTAATTGTTATGATTATAATTATAAAGGTACTA
AGGCTATTGCTTATAAACTAGAGGCTAAAATTTTAAATCAAGGACACATCAAAAAACGCCCAAGATTTCAAGAAGATACC
AATATACCTAAAAAATATAGAACTTATTGGGAGGATTATCTAAGAAGTGGTTATACAAGAGGGCATGTCGTGCCAAATCA
ATCCATGAATGCGACCCCACAAGCCCAACTTAGCACTTTTTTAATGAGCAACATAACTCCACAAAAAAAAGATATTAATG
CAGAAATTTGGAATGAAATCGAACAAAGAGAAAGATATTTAGCAAAGAAAAATAAAGAATTAGAAGTCTTAAATTTAGTA
CTTTATGATGATAAGCCAAAACGCATTAAAAACAACATAGCCATTCCTAGTTTTTATGTCAAAATTCTTAAGGCTAAAAA
TTTCAGCGAATGTTATAAAGTGCCAAATAATGATAATTTTGCAAGATTTGATAGAAATTATTTTAAGGAAGATTGTAAAA
AATATATTGATTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(37-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L4JPI8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

59.447

100

0.594
  CJE1441 Campylobacter jejuni RM1221

62.687

92.627

0.581

Multiple sequence alignment