Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   AAW51_RS05355 Genome accession   NZ_CP011371
Coordinates   1210540..1210923 (+) Length   127 a.a.
NCBI ID   WP_047193775.1    Uniprot ID   -
Organism   Caldimonas brevitalea strain DSM 7029     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 1205540..1215923
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAW51_RS05335 (AAW51_1070) - 1206463..1207878 (+) 1416 WP_047193771.1 GH1 family beta-glucosidase -
  AAW51_RS05340 (AAW51_1071) hemL 1207973..1209262 (-) 1290 WP_047193772.1 glutamate-1-semialdehyde 2,1-aminomutase -
  AAW51_RS05345 (AAW51_1072) thiD 1209252..1210175 (-) 924 WP_047193773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  AAW51_RS05350 (AAW51_1073) - 1210332..1210484 (+) 153 WP_047193774.1 rubredoxin -
  AAW51_RS05355 (AAW51_1074) pilG 1210540..1210923 (+) 384 WP_047193775.1 response regulator Regulator
  AAW51_RS05360 (AAW51_1075) - 1211036..1211401 (+) 366 WP_047193776.1 response regulator -
  AAW51_RS05365 (AAW51_1076) - 1211469..1212008 (+) 540 WP_047193777.1 chemotaxis protein CheW -
  AAW51_RS05370 (AAW51_1077) - 1212038..1214359 (+) 2322 WP_047193778.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 127 a.a.        Molecular weight: 14240.42 Da        Isoelectric Point: 5.1936

>NTDB_id=145180 AAW51_RS05355 WP_047193775.1 1210540..1210923(+) (pilG) [Caldimonas brevitalea strain DSM 7029]
MQVDAATKVLVIDDSNTIRRSAEIFLKQGGYEVVLAEDGFDALAKVNDHEPQLIFCDILMPRLDGYQTCAIIKRNPKFAQ
VPVIMLSSKDGLFDKARGRMVGSEDYLTKPFTKDQLLQAVEQYSRVA

Nucleotide


Download         Length: 384 bp        

>NTDB_id=145180 AAW51_RS05355 WP_047193775.1 1210540..1210923(+) (pilG) [Caldimonas brevitalea strain DSM 7029]
ATGCAGGTGGATGCCGCCACCAAGGTACTGGTCATCGATGACAGCAACACCATCCGCCGCAGCGCGGAAATCTTCCTGAA
GCAGGGGGGCTACGAGGTGGTGCTGGCTGAAGATGGCTTCGATGCCCTTGCCAAGGTCAACGACCATGAGCCGCAGCTGA
TCTTTTGCGATATTTTGATGCCCCGTCTCGACGGCTACCAGACCTGCGCCATCATCAAGCGCAATCCCAAGTTCGCGCAA
GTGCCGGTGATCATGCTGTCCTCGAAGGACGGCCTGTTCGACAAGGCACGCGGCCGCATGGTGGGCTCCGAAGACTACCT
GACCAAGCCGTTCACGAAAGACCAGCTGCTCCAGGCCGTGGAGCAGTACAGCCGGGTGGCTTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

61.207

91.339

0.559
  pilH Synechocystis sp. PCC 6803

41.026

92.126

0.378
  vicR Streptococcus mutans UA159

38.983

92.913

0.362

Multiple sequence alignment