Detailed information NTG0145156

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: TVD_RS02985
• Genome accession: NZ_CP011367
• Coordinates: 623789..625183 (-)
• Length: 464 a.a.
• NCBI ID: WP_047250780.1
• Uniprot ID: A0A0G3G1Y0
• Organism: Thioalkalivibrio versutus strain D301
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 618789..630183

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
TVD_RS14870	-	618955..619209 (+)	255	WP_082119064.1	hypothetical protein	-
TVD_RS02970 (TVD_02970)	-	619531..620724 (+)	1194	WP_047250778.1	efflux RND transporter periplasmic adaptor subunit	-
TVD_RS02975 (TVD_02975)	hrpB	620732..623239 (+)	2508	WP_047250779.1	ATP-dependent helicase HrpB	-
TVD_RS02980 (TVD_02980)	-	623555..623776 (+)	222	WP_018950603.1	hypothetical protein	-
TVD_RS02985 (TVD_02985)	pilR	623789..625183 (-)	1395	WP_047250780.1	sigma-54-dependent transcriptional regulator	Regulator
TVD_RS02990 (TVD_02990)	-	625180..626817 (-)	1638	WP_047250781.1	sensor histidine kinase	-
TVD_RS02995 (TVD_02995)	-	626827..627099 (-)	273	WP_018168003.1	PP0621 family protein	-
TVD_RS03000 (TVD_03000)	ppc	627214..630057 (-)	2844	WP_018938015.1	phosphoenolpyruvate carboxylase	-

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50550.53 Da
• Isoelectric Point: 4.8566

>NTDB_id=145156 TVD_RS02985 WP_047250780.1 623789..625183(-) (pilR) [Thioalkalivibrio versutus strain D301]
MSIRHVLVVDDEPDICELLEITLARMGLEATTATRLEPARALIAEHDFDLCLTDMRLPDGDGLDLVRHIQSERPELPVAV
ITAHGSVDTAVLALKLGAFDFVSKPVDLKQLRELIDAALRLEPAASIAEEPGDDATPATPDDSPLLGQSEPMQRLRATIH
KLARSQAPVFISGESGSGKELVAREIHRLGPRAERPFVPVNCGAIPGELMESEFFGHRKGAFTGATQDHTGLFQSADGGT
LFLDEVADLPLPMQVKLLRAIQERAIKPVGGTREIPVDVRILSATHHDLEKAVREGRFRQDLYYRLNVIELKVPPLRERR
GDIERLATRILQRIGEQWQTGDLELAPDALAALQGHGFPGNVRELENILERAATLCEGPLIRAGNIDLPANGLGTEPTPG
AEYGEPENGLDGAESALDDQLAAQERQAIATALQQTGGNRTAAARLLGLSFRQLRYRLKKLGIE

Nucleotide

• Length: 1395 bp

>NTDB_id=145156 TVD_RS02985 WP_047250780.1 623789..625183(-) (pilR) [Thioalkalivibrio versutus strain D301]
ATGAGTATCCGCCACGTGCTGGTCGTGGACGACGAGCCCGACATCTGCGAACTACTCGAGATCACCCTGGCCCGCATGGG
CCTTGAGGCCACCACGGCCACCCGACTCGAGCCGGCCCGCGCCCTGATCGCCGAGCACGACTTTGACCTGTGCCTGACCG
ACATGCGCCTGCCGGACGGCGATGGGCTGGACCTCGTCCGCCACATCCAGAGCGAACGCCCGGAACTCCCCGTGGCCGTC
ATCACCGCCCACGGCAGCGTGGATACCGCCGTCCTGGCGCTGAAGCTGGGGGCCTTCGACTTCGTCAGCAAGCCGGTGGA
CCTGAAACAGCTGCGCGAACTGATCGACGCGGCCCTGCGCCTGGAGCCGGCTGCCTCGATCGCGGAAGAGCCCGGCGACG
ACGCCACCCCGGCTACCCCCGATGACAGCCCGCTGCTGGGCCAGTCCGAGCCCATGCAGCGTCTGCGCGCCACCATCCAC
AAGCTGGCGCGCAGCCAGGCCCCGGTGTTCATCTCCGGAGAGTCCGGATCCGGCAAGGAGCTGGTCGCGCGCGAGATCCA
CCGCCTCGGCCCGCGCGCCGAACGTCCATTCGTGCCGGTCAACTGCGGCGCCATCCCCGGCGAGCTGATGGAGAGCGAAT
TCTTCGGCCACCGCAAGGGCGCGTTCACCGGCGCCACCCAGGACCATACCGGTCTGTTCCAGTCCGCCGACGGCGGCACG
CTGTTCCTCGACGAGGTCGCCGACCTGCCGCTGCCGATGCAGGTGAAGCTGCTGCGCGCCATCCAGGAACGCGCCATCAA
GCCGGTCGGTGGCACCCGCGAGATCCCGGTCGACGTACGCATCCTCAGCGCCACCCACCACGATCTGGAAAAGGCCGTGC
GCGAGGGCCGCTTTCGCCAGGATCTCTACTACCGCCTGAACGTGATCGAGCTGAAGGTGCCGCCGTTGCGCGAGCGCCGC
GGCGACATCGAACGCCTGGCCACGCGCATCCTGCAACGCATCGGCGAGCAGTGGCAGACCGGCGACCTGGAGCTGGCACC
CGACGCCCTCGCGGCCCTGCAGGGGCACGGCTTCCCCGGCAACGTCCGCGAGCTGGAGAACATCCTGGAACGCGCCGCCA
CGCTGTGCGAAGGGCCGCTGATCCGCGCCGGCAACATCGACCTGCCGGCGAACGGTCTGGGCACCGAACCCACCCCGGGC
GCGGAGTACGGCGAACCCGAGAACGGCCTCGACGGCGCGGAGAGCGCCCTGGACGACCAGCTCGCCGCGCAGGAACGCCA
GGCCATCGCGACCGCCCTGCAGCAGACCGGCGGCAACCGCACGGCCGCCGCACGCCTGCTCGGCCTCAGCTTTCGCCAGT
TGCGCTATCGCCTGAAGAAACTCGGGATCGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (6-115)

• Sigma-54 interaction domain (Sigma54_activat) (145-311)

3D structure

• AlphaFold DB: A0A0G3G1Y0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	61.638	100	0.616
pilR	Acinetobacter baumannii strain A118	49.465	100	0.498
luxO	Vibrio cholerae strain A1552	37.389	97.414	0.364