Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   AAV30_RS07055 Genome accession   NZ_CP011347
Coordinates   1388207..1388821 (+) Length   204 a.a.
NCBI ID   WP_038459268.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1383207..1393821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS07020 (AAV30_07020) aroE 1383893..1384735 (+) 843 WP_003152856.1 shikimate dehydrogenase -
  AAV30_RS07025 (AAV30_07025) yhbY 1384729..1385019 (+) 291 WP_007408257.1 ribosome assembly RNA-binding protein YhbY -
  AAV30_RS07030 (AAV30_07030) - 1385030..1385599 (+) 570 WP_007408258.1 nicotinate-nucleotide adenylyltransferase -
  AAV30_RS07035 (AAV30_07035) yqeK 1385589..1386164 (+) 576 WP_032873949.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  AAV30_RS07040 (AAV30_07040) rsfS 1386168..1386524 (+) 357 WP_007408260.1 ribosome silencing factor -
  AAV30_RS07045 (AAV30_07045) - 1386521..1387258 (+) 738 WP_038459270.1 class I SAM-dependent DNA methyltransferase -
  AAV30_RS07050 (AAV30_07050) comER 1387327..1388148 (-) 822 WP_012118027.1 late competence protein ComER -
  AAV30_RS07055 (AAV30_07055) comEA 1388207..1388821 (+) 615 WP_038459268.1 helix-hairpin-helix domain-containing protein Machinery gene
  AAV30_RS07060 (AAV30_07060) - 1388888..1389457 (+) 570 WP_038459266.1 ComE operon protein 2 -
  AAV30_RS07065 (AAV30_07065) comEC 1389458..1391809 (+) 2352 WP_038459264.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  AAV30_RS19475 (AAV30_07070) - 1391828..1391962 (-) 135 WP_003152870.1 YqzM family protein -
  AAV30_RS20000 - 1392003..1392154 (+) 152 Protein_1406 hypothetical protein -
  AAV30_RS07075 (AAV30_07075) holA 1392194..1393235 (+) 1042 Protein_1407 DNA polymerase III subunit delta -
  AAV30_RS07080 (AAV30_07080) rpsT 1393252..1393518 (-) 267 WP_003152876.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22206.44 Da        Isoelectric Point: 6.4939

>NTDB_id=144921 AAV30_RS07055 WP_038459268.1 1388207..1388821(+) (comEA) [Bacillus velezensis strain YJ11-1-4]
MTKAMMTEPLRRNLKILGACLVAGAVFICIWLFRSEKEEPVKQQSVLGQTASASVADKKDTADDKIMIDVKGAVRNPGVY
EMKAGDRVTQAIEKAGGLKKKADELKVNLAEQLQDGTIVYIPSEGEEENRPKTAAGEKENAAVNINTASLDELQAISGVG
QKKAEAIIAYREEKGRFQTAEDLMNVSGFGEKSFERIKTSITVK

Nucleotide


Download         Length: 615 bp        

>NTDB_id=144921 AAV30_RS07055 WP_038459268.1 1388207..1388821(+) (comEA) [Bacillus velezensis strain YJ11-1-4]
ATGACGAAAGCGATGATGACGGAGCCGCTGCGGCGGAACCTGAAAATTCTGGGCGCTTGTCTTGTAGCAGGGGCGGTTTT
TATCTGCATTTGGCTGTTTCGTTCTGAAAAGGAAGAGCCGGTCAAACAGCAGTCCGTGCTCGGCCAAACAGCCTCAGCAT
CCGTCGCGGACAAAAAAGACACCGCAGACGACAAGATTATGATTGATGTGAAAGGCGCGGTCCGAAATCCCGGCGTGTAT
GAAATGAAAGCGGGAGACAGAGTGACTCAAGCCATTGAAAAAGCCGGCGGCCTGAAGAAAAAGGCGGATGAATTGAAAGT
TAATTTAGCAGAGCAGCTGCAGGACGGGACGATTGTTTATATTCCGAGTGAAGGCGAAGAGGAGAATCGCCCGAAAACAG
CAGCGGGTGAAAAGGAGAATGCAGCTGTCAATATCAATACGGCATCTCTGGACGAACTTCAGGCGATTTCCGGGGTGGGG
CAGAAAAAAGCGGAAGCGATTATCGCCTACCGAGAAGAAAAAGGACGGTTTCAGACTGCTGAAGATTTGATGAATGTATC
AGGCTTTGGAGAAAAGTCATTTGAGCGGATAAAAACTTCCATTACGGTAAAGTGA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(68-122)

Helix-hairpin-helix motif (HHH_3)

(141-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Bacillus subtilis subsp. subtilis str. 168

58.115

93.627

0.544
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

35.071

100

0.363

Multiple sequence alignment