Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAV30_RS02680 Genome accession   NZ_CP011347
Coordinates   536183..536872 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain YJ11-1-4     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 531183..541872
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS02660 (AAV30_02660) - 531673..532749 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  AAV30_RS02665 (AAV30_02665) - 532848..534068 (-) 1221 WP_038460047.1 LCP family protein -
  AAV30_RS02670 (AAV30_02670) - 534073..534720 (-) 648 WP_007614107.1 YigZ family protein -
  AAV30_RS02675 (AAV30_02675) degS 534943..536106 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AAV30_RS02680 (AAV30_02680) degU 536183..536872 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAV30_RS02685 (AAV30_02685) - 536970..537818 (+) 849 WP_003151387.1 DegV family protein -
  AAV30_RS02690 (AAV30_02690) comFA 537926..539311 (+) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  AAV30_RS02695 (AAV30_02695) - 539369..539653 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  AAV30_RS02700 (AAV30_02700) comFC 539659..540348 (+) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  AAV30_RS02705 (AAV30_02705) - 540422..540841 (+) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  AAV30_RS02710 (AAV30_02710) flgM 540911..541177 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAV30_RS02715 (AAV30_02715) - 541192..541674 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=144906 AAV30_RS02680 WP_003219701.1 536183..536872(+) (degU) [Bacillus velezensis strain YJ11-1-4]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=144906 AAV30_RS02680 WP_003219701.1 536183..536872(+) (degU) [Bacillus velezensis strain YJ11-1-4]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATTAATATGCCGAATGTAAATGGTGTAGAGGCTACTAAACAGCTTGTAGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGTGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment