Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAV30_RS02700 Genome accession   NZ_CP011347
Coordinates   539659..540348 (+) Length   229 a.a.
NCBI ID   WP_199910472.1    Uniprot ID   -
Organism   Bacillus velezensis strain YJ11-1-4     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 534659..545348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV30_RS02675 (AAV30_02675) degS 534943..536106 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  AAV30_RS02680 (AAV30_02680) degU 536183..536872 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAV30_RS02685 (AAV30_02685) - 536970..537818 (+) 849 WP_003151387.1 DegV family protein -
  AAV30_RS02690 (AAV30_02690) comFA 537926..539311 (+) 1386 WP_038460045.1 DEAD/DEAH box helicase Machinery gene
  AAV30_RS02695 (AAV30_02695) - 539369..539653 (+) 285 WP_003151389.1 late competence development ComFB family protein -
  AAV30_RS02700 (AAV30_02700) comFC 539659..540348 (+) 690 WP_199910472.1 double zinc ribbon domain-containing protein Machinery gene
  AAV30_RS02705 (AAV30_02705) - 540422..540841 (+) 420 WP_038460041.1 TIGR03826 family flagellar region protein -
  AAV30_RS02710 (AAV30_02710) flgM 540911..541177 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAV30_RS02715 (AAV30_02715) - 541192..541674 (+) 483 WP_003151394.1 flagellar protein FlgN -
  AAV30_RS02720 (AAV30_02720) flgK 541690..543207 (+) 1518 WP_038460039.1 flagellar hook-associated protein FlgK -
  AAV30_RS02725 (AAV30_02725) flgL 543219..544136 (+) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  AAV30_RS02730 (AAV30_02730) - 544227..544796 (+) 570 WP_038460037.1 DUF6470 family protein -
  AAV30_RS02735 (AAV30_02735) fliW 544826..545257 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25255.87 Da        Isoelectric Point: 8.0697

>NTDB_id=144908 AAV30_RS02700 WP_199910472.1 539659..540348(+) (comFC) [Bacillus velezensis strain YJ11-1-4]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLYQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=144908 AAV30_RS02700 WP_199910472.1 539659..540348(+) (comFC) [Bacillus velezensis strain YJ11-1-4]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTTTACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment