Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAV29_RS17630 Genome accession   NZ_CP011346
Coordinates   3589393..3590082 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain JJ-D34     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3584393..3595082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS17595 (AAV29_17595) - 3584591..3585073 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AAV29_RS17600 (AAV29_17600) flgM 3585088..3585354 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAV29_RS17605 (AAV29_17605) - 3585424..3585843 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AAV29_RS17610 (AAV29_17610) comFC 3585917..3586606 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  AAV29_RS17615 (AAV29_17615) - 3586612..3586896 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AAV29_RS17620 (AAV29_17620) comFA 3586954..3588339 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  AAV29_RS17625 (AAV29_17625) - 3588447..3589295 (-) 849 WP_044052857.1 DegV family protein -
  AAV29_RS17630 (AAV29_17630) degU 3589393..3590082 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAV29_RS17635 (AAV29_17635) degS 3590159..3591322 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AAV29_RS17640 (AAV29_17640) - 3591544..3592191 (+) 648 WP_046560107.1 YigZ family protein -
  AAV29_RS17645 (AAV29_17645) - 3592196..3593410 (+) 1215 WP_003151383.1 LCP family protein -
  AAV29_RS17650 (AAV29_17650) - 3593500..3594576 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=144888 AAV29_RS17630 WP_003219701.1 3589393..3590082(-) (degU) [Bacillus velezensis strain JJ-D34]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=144888 AAV29_RS17630 WP_003219701.1 3589393..3590082(-) (degU) [Bacillus velezensis strain JJ-D34]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment