Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAV29_RS17620 Genome accession   NZ_CP011346
Coordinates   3586954..3588339 (-) Length   461 a.a.
NCBI ID   WP_046560106.1    Uniprot ID   -
Organism   Bacillus velezensis strain JJ-D34     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3581954..3593339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAV29_RS17585 (AAV29_17585) flgL 3582129..3583046 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  AAV29_RS17590 (AAV29_17590) flgK 3583058..3584575 (-) 1518 WP_043867468.1 flagellar hook-associated protein FlgK -
  AAV29_RS17595 (AAV29_17595) - 3584591..3585073 (-) 483 WP_003151394.1 flagellar protein FlgN -
  AAV29_RS17600 (AAV29_17600) flgM 3585088..3585354 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAV29_RS17605 (AAV29_17605) - 3585424..3585843 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  AAV29_RS17610 (AAV29_17610) comFC 3585917..3586606 (-) 690 WP_197080391.1 phosphoribosyltransferase family protein Machinery gene
  AAV29_RS17615 (AAV29_17615) - 3586612..3586896 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  AAV29_RS17620 (AAV29_17620) comFA 3586954..3588339 (-) 1386 WP_046560106.1 DEAD/DEAH box helicase Machinery gene
  AAV29_RS17625 (AAV29_17625) - 3588447..3589295 (-) 849 WP_044052857.1 DegV family protein -
  AAV29_RS17630 (AAV29_17630) degU 3589393..3590082 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAV29_RS17635 (AAV29_17635) degS 3590159..3591322 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  AAV29_RS17640 (AAV29_17640) - 3591544..3592191 (+) 648 WP_046560107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52557.10 Da        Isoelectric Point: 10.1601

>NTDB_id=144887 AAV29_RS17620 WP_046560106.1 3586954..3588339(-) (comFA) [Bacillus velezensis strain JJ-D34]
MAEGASEFSEVRDFFYGRHLLRSEIPFSDHRIKRFIEKEYITAEPSIIRRKNCYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVMMGRADELTSLYSWNQAPENRWKPVKLSWEGTLTDGQKQAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNQGLRVCVATPRTDVVLELLPRLKKAFEKVDVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKNAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKYFSGDVVLFHFGITVGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=144887 AAV29_RS17620 WP_046560106.1 3586954..3588339(-) (comFA) [Bacillus velezensis strain JJ-D34]
ATGGCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCATCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAACTGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCATGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCCTGAAAACAG
ATGGAAGCCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCAGGCCGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCTGGTATCGAGTTT
GCCCTGAATCAAGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGACGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGCTTGACTCCGCTGATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGGTTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCTGA
CACATTAAAAAAGAATGCTGAAGCAGGTTTGCTGAAAAGCGTTCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGCAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTACATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGATCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAATATTTCAGCGG
TGATGTCGTCCTGTTTCATTTCGGAATTACAGTCGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(328-421)

Type III restriction enzyme, res subunit (ResIII)

(118-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

63.261

99.783

0.631

Multiple sequence alignment