Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   YH61_RS04700 Genome accession   NZ_CP011330
Coordinates   1015346..1016476 (-) Length   376 a.a.
NCBI ID   WP_001045766.1    Uniprot ID   Q9ZN24
Organism   Helicobacter pylori J99     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010346..1021476
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YH61_RS08855 (YH61_04675) - 1011060..1011356 (+) 297 WP_000466434.1 hypothetical protein -
  YH61_RS09040 - 1011508..1011725 (+) 218 Protein_933 anthranilate synthase component I -
  YH61_RS04685 (YH61_04680) - 1011753..1012685 (-) 933 WP_001002487.1 GDP-L-fucose synthase -
  YH61_RS04690 (YH61_04685) gmd 1012678..1013823 (-) 1146 WP_046655973.1 GDP-mannose 4,6-dehydratase -
  YH61_RS04695 (YH61_04690) - 1013864..1015276 (-) 1413 WP_000694964.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  YH61_RS04700 (YH61_04695) comB10 1015346..1016476 (-) 1131 WP_001045766.1 DNA type IV secretion system protein ComB10 Machinery gene
  YH61_RS04705 (YH61_04700) comB9 1016469..1017455 (-) 987 WP_001878684.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  YH61_RS04710 (YH61_04705) comB8 1017455..1018198 (-) 744 WP_000660577.1 virB8 family protein Machinery gene
  YH61_RS04715 (YH61_04710) comB7 1018195..1018308 (-) 114 WP_001217877.1 hypothetical protein Machinery gene
  YH61_RS04720 (YH61_04715) comB6 1018324..1019379 (-) 1056 WP_000679725.1 P-type conjugative transfer protein TrbL Machinery gene
  YH61_RS04725 (YH61_04720) - 1019387..1020391 (-) 1005 WP_000468465.1 PDZ domain-containing protein -
  YH61_RS04730 (YH61_04725) - 1020391..1020693 (-) 303 WP_000347931.1 YbaB/EbfC family nucleoid-associated protein -
  YH61_RS04735 (YH61_04730) panD 1020696..1021049 (-) 354 WP_000142257.1 aspartate 1-decarboxylase -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 41989.41 Da        Isoelectric Point: 9.7473

>NTDB_id=144663 YH61_RS04700 WP_001045766.1 1015346..1016476(-) (comB10) [Helicobacter pylori J99]
MNKWIKGAVVFVGGFATITTFSLIYHQKPKAPLNNQPSLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNYSKEETFTSPPMDPKTTPPKKDFSPKQLDLLASRITPFKQSPKNYEENLIFPVDNPNGIDSFTNLKEKD
IATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWSRI
ITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEEVTNFFGDYLLLQLMR
QSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=144663 YH61_RS04700 WP_001045766.1 1015346..1016476(-) (comB10) [Helicobacter pylori J99]
GTGAATAAGTGGATTAAAGGGGCGGTTGTTTTTGTAGGGGGTTTTGCAACGATTACAACCTTTTCTTTAATCTACCACCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCTAGCCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACGGAAAGCTCCAAAGACGCTACCATCAAAGCCTTACAAGAACAGCTCAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAATTATTCCAAAGAAGAGACTTTTACTAGCCCTCCCATGGATCCAAAAAC
AACCCCCCCTAAAAAAGACTTTTCTCCAAAACAATTAGATTTACTGGCCTCTCGCATCACCCCTTTCAAGCAAAGCCCTA
AAAATTACGAAGAAAACCTGATTTTCCCTGTGGATAACCCTAATGGCATTGATAGTTTCACTAACCTTAAAGAAAAAGAC
ATCGCCACTAATGAAAACAAGCTTTTACGCACCATTACAGCTGACAAAATGATACCCGCTTTTTTGATTACGCCCATTTC
TAGCCAGATCGCTGGTAAAGTGATTGCGCAAGTGGAGAGCGATATTTTTGCAAGCATGGGCAAAGCCGTCTTAATCCCCA
AAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGTCGAATC
ATCACTCCCCATGGCATTAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGTGGGGGA
ATTGATTGAAAGGAATTTCCAACGCTATGGCGTGCCGTTACTGCTTTCTACGCTCACTAACGGCCTATTGATTGGGATCA
CTTCGGCTTTAAACAACAGAGGCAATAAAGAAGAGGTGACTAATTTCTTTGGGGATTATCTTTTATTGCAATTGATGAGG
CAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAGATCGCCCCCATTGTGGTGATTAG
AGAGGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTCCCTATACCCAGAGAGAATGAAGTCATCGCTGAGT
TTTTGAAGTGA

Domains

Predicted by InterproScan.

Bacterial conjugation TrbI-like protein (TrbI)

(171-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9ZN24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

95.479

100

0.955

Multiple sequence alignment