Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | YH61_RS04715 | Genome accession | NZ_CP011330 |
| Coordinates | 1018195..1018308 (-) | Length | 37 a.a. |
| NCBI ID | WP_001217877.1 | Uniprot ID | A0A1A9H2U2 |
| Organism | Helicobacter pylori J99 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1013195..1023308
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YH61_RS04695 (YH61_04690) | - | 1013864..1015276 (-) | 1413 | WP_000694964.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
| YH61_RS04700 (YH61_04695) | comB10 | 1015346..1016476 (-) | 1131 | WP_001045766.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| YH61_RS04705 (YH61_04700) | comB9 | 1016469..1017455 (-) | 987 | WP_001878684.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| YH61_RS04710 (YH61_04705) | comB8 | 1017455..1018198 (-) | 744 | WP_000660577.1 | virB8 family protein | Machinery gene |
| YH61_RS04715 (YH61_04710) | comB7 | 1018195..1018308 (-) | 114 | WP_001217877.1 | hypothetical protein | Machinery gene |
| YH61_RS04720 (YH61_04715) | comB6 | 1018324..1019379 (-) | 1056 | WP_000679725.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| YH61_RS04725 (YH61_04720) | - | 1019387..1020391 (-) | 1005 | WP_000468465.1 | PDZ domain-containing protein | - |
| YH61_RS04730 (YH61_04725) | - | 1020391..1020693 (-) | 303 | WP_000347931.1 | YbaB/EbfC family nucleoid-associated protein | - |
| YH61_RS04735 (YH61_04730) | panD | 1020696..1021049 (-) | 354 | WP_000142257.1 | aspartate 1-decarboxylase | - |
| YH61_RS04740 (YH61_04735) | - | 1021039..1023267 (-) | 2229 | WP_000357196.1 | ATP-dependent Clp protease ATP-binding subunit | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4291.23 Da Isoelectric Point: 9.3572
>NTDB_id=144666 YH61_RS04715 WP_001217877.1 1018195..1018308(-) (comB7) [Helicobacter pylori J99]
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFFVIMGLVLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=144666 YH61_RS04715 WP_001217877.1 1018195..1018308(-) (comB7) [Helicobacter pylori J99]
ATGAGGATTTTTTTTGTTATTATGGGACTTGTGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
TACCTTGTATGAAAACAGGTTAAATCTCGCATGA
ATGAGGATTTTTTTTGTTATTATGGGACTTGTGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
TACCTTGTATGAAAACAGGTTAAATCTCGCATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
97.297 |
100 |
0.973 |